Unless otherwise noted, all files are in FASTA format and compressed with Gnu Zip (gzip).To uncompress files: on Mac use StuffIt, on PC use WinZip or WinRAR.

NOTE: Masked regions are represented with lowercase characters; gaps in the assembly are represented with Ns.

Assembly:

Assembled scaffolds (unmasked): Aspergillus_niger_v3_Unmasked_Assembly.fasta.gz

Assembled scaffolds (masked): Aspergillus_niger_v3_masked_assembly.fasta.gz

Annotation:

Filtered Models ("best")

Proteins: Aspergillus_niger_v3_FilteredModels_proteins.fasta.gz

Transcripts: Aspergillus_niger_v3_FilteredModels_transcripts.fasta.gz

Genes: Aspergillus_niger_v3_FilteredModels_genes.gff.gz

Functional Annotations

EC annotations and KEGG pathway mappings: Aspergillus_niger_v3_FilteredModels_kegg.tab.gz

GO annotations: Aspergillus_niger_v3_FilteredModels_go.tab.gz

KOG annotations: Aspergillus_niger_v3_FilteredModels_kog.tab.gz

Interpro annotations: Aspergillus_niger_v3_FilteredModels_ipr.tab.gz

SignalP annotations: Aspergillus_niger_v3_FilteredModels_signalp.tab.gz

Gene (mapped_forward_model)annotations: Aspergillus_Niger_v3.0_mapped_forward_model.gff.gz

Gene annotations: Aspergillus_niger_v3_genes.gff.gz

EST's

Aspergillus_niger_v3_454_100.fasta.gz

Aspergillus_niger_v3_FLX_EST_Cluster_Consensi.fasta.gz

Aspergillus_niger_v3_FLX_ESTs.fasta.gz

Aspergillus_niger_v3_Sanger_EST_Cluster_Consensi.fasta.gz

Aspergillus_niger_v3_Sanger_ESTs.fasta.gz