archive
Chlamydomonas reinhardtii v3.0
Please note that this organism is for archival use only. Please see the current Chlamydomonas reinhardtii v4.0 site for the latest data and information.

Download Data

Unless otherwise noted, all files are in FASTA format and compressed with gzip.

NOTE: Masked regions are represented with lowercase characters; gaps in the assembly are represented with Ns.

Assembly v.3.1

BAC and fosmid ends: Chlre3_BAC_and_fosmid_ends.fasta.gz

unmasked assembly (excluding scaffolds listed below): Chlre3_1.fasta.gz

'1st milestone' gene catalog frozen for publication (proteins): Chlre3_1.GeneCatalogProteins.6JUL06.fasta.gz

'1st milestone' gene catalog frozen for publication (transcripts): Chlre3_1.GeneCatalogTranscripts.6JUL06.fasta.gz

Scaffolds excluded from v.3.1 assembly file based on blast hits or manual examination:

Chlre3_1.chloroplast.scaffolds.fasta.gz

Chlre3_1.manual_contamination.scaffolds.fasta.gz

Chlre3_1.mitochondrion.scaffolds.fasta.gz

Chlre3_1.noncellular.scaffolds.fasta.gz

Chlre3_1.prokaryotic.scaffolds.fasta.gz

Chlre3_1.unclassified.scaffolds.fasta.gz

Chlre3_1.bonus.scaffolds.fasta.gz

FROZEN GENE CATALOG

Proteins: Chlre3_1.GeneCatalog_2007_09_13.proteins.fasta.gz

Transcripts: Chlre3_1.GeneCatalog_2007_09_13.transcripts.fasta.gz

Genes: Chlre3_GeneCatalog_2007_09_13.gff.gz

Assembly v.3.0

assembled scaffolds (unmasked): Chlre3.fasta.gz

assembled scaffolds (masked): Chlre3.allmasked.gz

annotation models (transcripts): transcripts.Chlre3.fasta.gz

annotation models (proteins): proteins.Chlre3.fasta.gz

annotation models (all gene models): allChlre3.proteins.fasta.gz

transposable elements repeat library (provided by Vladimir Kapitanov): CHLREP.fn.gz

Functional Annotation

GO annotations: Chlre3_GO.tab.gz

KOG annotations: Chlre3_KOG.tab.gz

EC annotations and KEGG pathway: Chlre3_EC.tab.gz

InterPro domains: Chlre3_IPR.tab.gz

Assembly v.2.0 (October 2003)

assembled scaffolds (unmasked): chlre2.fasta.gz

assembled scaffolds (masked): chlre2.allmasked.gz

predicted proteins: proteins.finalModelsV2.fasta.gz

ESTs

Chlre3_1_allESTs.fasta.gz

Chlre3_1_ESTcluster.cr_171.fasta.gz

Chlre3_1_ESTcluster.cr_210.fasta.gz

Volvox Whole Genome Shotgun Sequence

Download a single large file or multiple smaller files of the same data.

Mac and PC users should download the smaller files. To uncompress files: on Mac use StuffIt, on PC use WinZip or WinRAR.

All reads fasta file:

volvox00.fasta.Z

All reads in separate fasta files:

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