Download Data

Unless otherwise noted, all files are in FASTA format and compressed with gzip.

NOTE: Masked regions are represented with lowercase characters; gaps in the assembly are represented with Ns.

Assembly v.3.1

unmasked assembly (excluding scaffolds listed below): Chlre3_1.fasta.gz

'1st milestone' gene catalog frozen for publication (proteins): Chlre3_1.GeneCatalogProteins.6JUL06.fasta.gz

'1st milestone' gene catalog frozen for publication (transcripts): Chlre3_1.GeneCatalogTranscripts.6JUL06.fasta.gz

Scaffolds excluded from v.3.1 assembly file based on blast hits or manual examination:

Chlre3_1.chloroplast.scaffolds.fasta.gz

Chlre3_1.manual_contamination.scaffolds.fasta.gz

Chlre3_1.mitochondrion.scaffolds.fasta.gz

Chlre3_1.noncellular.scaffolds.fasta.gz

Chlre3_1.prokaryotic.scaffolds.fasta.gz

Chlre3_1.unclassified.scaffolds.fasta.gz

FROZEN GENE CATALOG

Proteins: Chlre3_1.GeneCatalog_2007_09_13.proteins.fasta.gz

Transcripts: Chlre3_1.GeneCatalog_2007_09_13.transcripts.fasta.gz

Genes: Chlre3_GeneCatalog_2007_09_13.gff.gz

Assembly v.3.0

assembled scaffolds (unmasked): Chlre3.fasta.gz

assembled scaffolds (masked): Chlre3.allmasked.gz

annotation models (transcripts): transcripts.Chlre3.fasta.gz

annotation models (proteins): proteins.Chlre3.fasta.gz

annotation models (all gene models): allChlre3.proteins.fasta.gz

transposable elements repeat library (provided by Vladimir Kapitanov): CHLREP.fn.gz

Functional Annotation

GO annotations: Chlre3_GO.tab.gz

KOG annotations: Chlre3_KOG.tab.gz

EC annotations and KEGG pathway: Chlre3_EC.tab.gz

InterPro domains: Chlre3_IPR.tab.gz

Assembly v.2.0 (October 2003)

assembled scaffolds (unmasked): chlre2.fasta.gz

assembled scaffolds (masked): chlre2.allmasked.gz

predicted proteins: proteins.finalModelsV2.fasta.gz

ESTs

Chlre3_1_allESTs.fasta.gz

Chlre3_1_ESTcluster.cr_171.fasta.gz

Chlre3_1_ESTcluster.cr_210.fasta.gz

Volvox Whole Genome Shotgun Sequence

Download a single large file or multiple smaller files of the same data.

Mac and PC users should download the smaller files. To uncompress files: on Mac use StuffIt, on PC use WinZip or WinRAR.

All reads fasta file:

volvox00.fasta.Z

All reads in separate fasta files:

Download files

Comments/Questions
DOE Joint Genome Institute © 2008