Download Data
Unless otherwise noted, all files are in FASTA format and compressed with Gnu Zip (gzip).To uncompress files: on Mac use StuffIt, on PC use WinZip or WinRAR.
NOTE: Masked regions are represented with lowercase characters; gaps in the assembly are represented with Ns.
Assembly
Assembled scaffolds:
Daphnia_pulex.fasta.gz (unmasked)
Daphnia_pulex.allmasked.gz (masked)
Annotation
"Filtered Models" is
the filtered set of models representing the best gene model for each
locus. "All Models" represents all models generated for this
genome which may include redundant model sets for each locus. "Frozen
Gene Catalog" contains all manual curations as of July 3,
2007 as well as automatically annotated models chosen from the FilteredModels
v1.1 set.
Frozen
Gene Catalog
FrozenGeneCatalog20110204.proteins.fasta.gz (proteins)
FrozenGeneCatalog20110204.transcripts.fasta.gz (transcripts)
FrozenGeneCatalog20110204.gff.gz (gff)
FrozenGeneCatalog20110204.gff3.gz (gff3)
FrozenGeneCatalog20110204.CDS.fasta.gz(CDS)
Filtered
Models v1.1
FilteredModelsv1.1.aa.fasta.gz (proteins)
FilteredModelsv1.1.na.fasta.gz (transcripts)
FilteredModelsv1.1.gff.gz (gff)
FilteredModels1.1.gff3.gz (gff3)
FilteredModels1.1.CDS.fasta.gz (CDS)
Filtered
Models v1.0
FilteredModelsv1.0.aa.fasta.gz
(proteins)
FilteredModelsv1.0.na.fasta.gz
(transcripts)
FilteredModelsv1.0.gff.gz
(gff)
FilteredModels1.0.gff3.gz (gff3)
FilteredModels1.0.CDS.fasta.gz (CDS)
All Models
allModels.aa.fasta.gz (proteins)
allModels.na.fasta.gz (transcripts)
allModels.gff.gz (genes)
allModels.gff3.gz (gff3)
allModels.CDS.fasta.gz (CDS)
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