Daphnia pulex v1.0

Download Data

Unless otherwise noted, all files are in FASTA format and compressed with Gnu Zip (gzip).To uncompress files: on Mac use StuffIt, on PC use WinZip or WinRAR.

NOTE: Masked regions are represented with lowercase characters; gaps in the assembly are represented with Ns.

Assembly

Assembled scaffolds:

Daphnia_pulex.fasta.gz (unmasked)

Daphnia_pulex.allmasked.gz (masked)

Annotation

"Filtered Models" is the filtered set of models representing the best gene model for each locus. "All Models" represents all models generated for this genome which may include redundant model sets for each locus. "Frozen Gene Catalog" contains all manual curations as of July 3, 2007 as well as automatically annotated models chosen from the FilteredModels v1.1 set.

Frozen Gene Catalog

FrozenGeneCatalog_2007_07_03.aa.fasta.gz (proteins)

FrozenGeneCatalog_2007_07_03.na.fasta.gz (transcripts)

FrozenGeneCatalog_2007_07_03.gff.gz (gff)

Functional Annotation

Dappu1_ecpathwayinfo.tab.gz (EC annotations and KEGG pathway mappings)

Dappu1_goinfo.tab.gz (GO annotations)

Dappu1_koginfo.tab.gz (KOG annotations)

Filtered Models v1.1

FilteredModelsv1.1.aa.fasta.gz (proteins)

FilteredModelsv1.1.na.fasta.gz (transcripts)

FilteredModelsv1.1.gff.gz (gff)

Filtered Models v1.0

FilteredModelsv1.0.aa.fasta.gz (proteins)

FilteredModelsv1.0.na.fasta.gz (transcripts)

FilteredModelsv1.0.gff.gz (gff)

All Models

allModels.aa.fasta.gz (proteins)

allModels.na.fasta.gz (transcripts)

allModels.gff.gz (genes)