Status
Summary statistics for the Laccaria bicolor v2.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 60.71 |
| # of contigs | 584 |
| # of scaffolds | 55 |
| # of scaffolds >= 2Kbp | 55 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 4.31 |
| # of gaps | 529 |
| % of scaffold length in gaps | 2.0% |
| Three largest Scaffolds (Mbp) | 12.61, 7.96, 4.75 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EST Clusters | Sanger EST Clusters | 14312 | 9516 | 66.5% |
| ESTs | Sanger ESTs | 38901 | 30594 | 78.6% |
| EST Clusters | 454 Clusters | 10598 | 8958 | 84.5% |
| ESTs | 454 ESTs | 186230 | 87856 | 47.2% |
| EST Clusters | Illumina Assembled RNAseq | 89008 | 35406 | 39.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1549 | 1191 |
| transcript | 1163 | 876 |
| exon | 220 | 135 |
| intron | 92 | 57 |
| description: | ||
| protein length (aa) | 356 | 267 |
| exons per gene | 5.28 | 4 |
| # of gene models | 23132 |
Collaborators
Francis Martin, Ph.D., Tree-Microbe Interactions Department, INRA-Nancy
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
