Download Data

Unless otherwise noted, all files are in FASTA format and compressed with Gnu Zip (gzip).To uncompress files: on Mac use StuffIt, on PC use WinZip or WinRAR.

NOTE: Masked regions are represented with lowercase characters; gaps in the assembly are represented with Ns.

Annotation v1.1 (December 2004)

Please Note: annotation v1.1 is based on the assembly release v1.0.

Proteins: proteins.Poptr1_1.JamboreeModels.fasta.gz

Transcripts: transcripts.Poptr1_1.JamboreeModels.fasta.gz

Genes: Poptr1_1.JamboreeModels.gff.gz

Coming soon: manually curated set of genes based on revised v1.1 annotations

Functional Annotation

GO annotations: Poptr1_1.goinfo.tab.gz

KOG annotations: Poptr1_1.koginfo.tab.gz

EC annotations and KEGG pathway: Poptr1_1.ecpathwayinfo.tab.gz

InterPro domains: Poptr1_1_domaininfo_FilteredModels5.tab.gz

Assembly Release v1.0 (June 2004)

Assembled scaffolds (unmasked): poplar.unmasked.fasta.gz

Assembled scaffolds (masked): poplar.masked.fasta.gz