Download Data

Unless otherwise noted, all files are in FASTA format and compressed with Gnu Zip (gzip).To uncompress files: on Mac use StuffIt, on PC use WinZip or WinRAR.

NOTE: Masked regions are represented with lowercase characters; gaps in the assembly are represented with Ns.

Assembly

Assembled scaffolds (unmasked): Sorbi1_assembly_scaffolds.fasta.gz

Assembled scaffolds (masked): Sorbi1_assembly_scaffolds_repeatmasked.fasta.gz

Annotation

"Filtered Models" is the filtered set of models representing the best gene model for each locus. "All Models" represents all models generated for this genome which may include redundant model sets for each locus.

Sbi1_4

Proteins: Sorbi1_GeneModels_Sbi1_4_aa.fasta.gz

Transcripts: Sorbi1_GeneModels_Sbi1_4_nt.fasta.gz

Genes: Sorbi1_GeneModels_Sbi1_4_Sbi1_4.gff.gz

Functional Annotations

EC annotations and KEGG pathway mappings: Sorbi1_ecpathwayinfo_Sbi1_4.tab.gz

GO annotations: Sorbi1_goinfo_Sbi1_4.tab.gz

KOG annotations: Sorbi1_koginfo_Sbi1_4.tab.gz

Filtered Models

Proteins: Sorbi1_GeneModels_FilteredModels6_aa.fasta.gz

Transcripts: Sorbi1_GeneModels_FilteredModels6_nt.fasta.gz

Genes: Sorbi1_GeneModels_FilteredModels6_FilteredModels6.gff.gz

Functional Annotations

EC annotations and KEGG pathway mappings: Sorbi1_ecpathwayinfo_FilteredModels6.tab.gz

GO annotations: Sorbi1_goinfo_FilteredModels6.tab.gz

KOG annotations: Sorbi1_koginfo_FilteredModels6.tab.gz

All Models, Filtered and Not

Proteins: Sorbi1_GeneModels_AllModels_20080319_aa.fasta.gz

Transcripts: Sorbi1_GeneModels_AllModels_20080319_nt.fasta.gz

Genes: Sorbi1_GeneModels_AllModels_20080319.gff.gz

ESTs

Clustered ESTs: Sorbi1_EstClusters_SBGI_052604_TC.fasta.gz

Single ESTs: Sorbi1_Ests_SorghumDbEstSequences.fasta.gz