Trichoderma atroviride v2.0

Unless otherwise noted, all files are in FASTA format and compressed with Gnu Zip (gzip).To uncompress files: on Mac use StuffIt, on PC use WinZip or WinRAR.

NOTE: Masked regions are represented with lowercase characters; gaps in the assembly are represented with Ns.

Assembly:

Assembled scaffolds (unmasked): Trichoderma_atroviride_v2_AssemblyScaffolds.fasta.gz

Assembled scaffolds (masked): Trichoderma_atroviride_v2.allmasked.gz

Annotation:

"Frozen Gene Catalog" contains all manual curations as well as automatically annotated models chosen from the FilteredModels set. "All Models" represents all models generated for this genome which may include redundant model sets for each locus.

Frozen Gene Catalog

Proteins: Tatroviridev2_FrozenGeneCatalog_20100319.proteins.fasta.gz

Transcripts: Tatroviridev2_FrozenGeneCatalog_20100319.transcripts.fasta.gz

Genes: Tatroviridev2_FrozenGeneCatalog_20100319.gff.gz

CDS: Tatroviridev2_FrozenGeneCatalog_20100319.CDs.fasta.gz

Functional Annotations

GO annotations: Tatroviridev2_goinfo_FrozenGeneCatalog_20100319.tab.gz

KOG annotations: Tatroviridev2_koginfo_FrozenGeneCatalog_20100319.tab.gz

KEGG annotations: Tatroviridev2_ecpathwayinfo_FrozenGeneCatalog_20100319.tab.gz

InterPro domains: Tatroviridev2_domaininfo_FrozenGeneCatalog_20100319.tab.gz

Signalp: Tatroviridev2_signalp_FrozenGeneCatalog_20100319.tab.gz

All Models, Filtered and Not

Proteins: Tatroviridev2_allModels.proteins.fasta.gz

Transcripts: Tatroviridev2_allModels.transcripts.fasta.gz

Genes: Tatroviridev2_allModels.gff.gz

CDS: Tatroviridev2_allModels.CDS.fasta.gz

ESTs:

Clusters: Tatroviridev2_ESTclusters.fasta.gz

ESTs: Tatroviridev2_ESTs.fasta.gz