Status

v.1.0. (December 21, 2007): The assembly release of whole genome shotgun reads was constructed with the JGI assembler, JAZZ, using paired end sequencing reads at a coverage of 8X.
The short summary of the genome is as follows:

Main Genome read total: 445,647
Main Genome Scaffold total: 135
Main Genome Contig total: 669
Main Genome scaffold sequence total: 38.8 Mb
Main Genome Contig sequence total: 38.6 Mb (-> 0.4% gap)
Main Genome Scaffold N/L50: 9/1.7 Mb
Main Genome Contig N/L50: 71/167 Kb
Main Genome Depth: 8.05 +/-0.04

The current draft release, version 1.0, includes a total of 11,643 gene models predicted and functionally annotated using the JGI annotation pipeline.

Collaborators

• Chuck Kenerley, TAMU - Texas A and M University
• Heather Wilkinson, TAMU - Texas A and M University
• Dan Ebbole, TAMU - Texas A and M University
• Christian Kubicek, TU-Wien
• Alfredo Herrera-Estrella, Cinvestav
• Helena Nevalainen, Macquarie University
• Scott Baker, Pacific Northwest National Laboratory
• Ben Horwitz, Technio - Israel Institute of Technology

Links

• Trichoderma reesei home page (JGI)

Funding

This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396.