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Xenopus tropicalis v4.1
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Download Data

Unless otherwise noted, all files are in FASTA format and compressed with Gnu Zip (gzip).To uncompress files: on Mac use StuffIt, on PC use WinZip or WinRAR.

NOTE: Masked regions are represented with lowercase characters; gaps in the assembly are represented with Ns.

 

Assembly v.4.1 (August 2005)
To read the assembly release notes, click here.

 

Scaffolds:

X. tropicalis release 4.1 assembled scaffolds (unmasked): Xentr4.fasta.gz

X. tropicalis release 4.1 assembled scaffolds (masked): Xentr4.allmasked.gz

 

Annotations:

X. tropicalis release 4.1 predicted proteins: proteins.Xentr4.fasta.gz

X. tropicalis release 4.1 predicted transcripts: transcripts.Xentr4.fasta.gz

X. tropicalis release 4.1 filtered models, genes: Xentr4_FilteredModels1.gff.gz

X. tropicalis release 4.1 filtered models: Xentr4_FilteredModels1.gtf.gz

Functional Annotation

GO annotations: Xtropicalis.goinfo.tab.gz

KOG annotations: Xtropicalis.koginfo.tab.gz

EC annotations and KEGG pathway: Xtropicalis.ecpathwayinfo.tab.gz

InterPro domains: Xtropicalis.proteindomaininfo_FilteredModels1.tab.gz

 
Assembly v.3.0 (October 2004)
To read the genome assembly project notes, click here.
 

Scaffolds:

X. tropicalis release 3.0 assembled scaffolds (unmasked): xenopus.041015.fasta.gz

X. tropicalis release 3.0 assembled scaffolds (masked): xenopus.041015.allmasked.gz

 

Repeats:

X. tropicalis release 3.0 repeats library: xt3.lib1.fasta.gz

 

Reads
Download a single large file or multiple smaller files of the same data. Mac and PC users should download the smaller files.

 

All reads fasta file: xenopus0.fasta.Z (~7.1 GB uncompressed)

All reads in separate fasta files: Download files.

 

BACs
"Final," "Draft," and "Marked" BACs.

 

Final--completed clones with accession numbers: Download files.

Draft--have a depth of coverage greater or equal to 3.0: Download files.

Marked--do not yet meet the "draft" or "final" criteria: Download files.

 

ESTs

 

All current EST files: Download files