Xenopus tropicalis v4.1
TRANSCRIPT ANNOTATION 
Xentr4/scaffold_11:3210428-3214292 gw1.11.241.1 Hide 
AttributeValueCreatorAction
Name  
Description  
Model Notes  
Defline  
Disposition  
Literature  
Assessment
 ? 
NoteCreatorAction
EST evidence  
Needs GO  
EvidenceTypeCreatorAction
 

FUNCTIONAL (PROTEIN) ANNOTATION
User-Assigned Ontology       
ASPECT DETAILS
function
      
process
      
component
      
enzyme
      
kog
      
Automatic Ontology and Best Protein Alignments for transcript 103678
Automatic Ontology
ASPECT
GO/ECSUPPORTAction
function
3924  Catalysis of the reaction: GTP + H2O = GDP + phosphate.IPR008280  Tubulin/FtsZ, C-terminal 
5198  The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell.IPR000217  Tubulin 
 IPR002452  Alpha tubulin 
5525  Interacting selectively with GTP, guanosine triphosphate.IPR008280  Tubulin/FtsZ, C-terminal 
process
46785  The addition of tubulin heterodimers to one or both ends of a microtubule.IPR008280  Tubulin/FtsZ, C-terminal 
7018  Movement of organelles, other microtubules and other particles along microtubules, mediated by motor proteins.IPR000217  Tubulin 
 IPR002452  Alpha tubulin 
 IPR000217  Tubulin 
component
45298  A heterodimer of tubulins alpha and beta that constitutes the protomer for microtubule assembly.IPR008280  Tubulin/FtsZ, C-terminal 
5874  Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.IPR000217  Tubulin 
 IPR002452  Alpha tubulin 

High Scoring Alignments 

gi|47498000|ref|NP_998847.1|
tubulin, alpha 4 [Xenopus tropicalis] >gi|45709763|gb|AAH67974.1| Tubulin, alpha 4 [Xenopus tropicalis] >gi|89272072|emb|CAJ81313.1| tubulin, alpha 2 [Xenopus tropicalis]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2166
0.0
98%
98%
98%

dre:373080
tuba1; tubulin, alpha 1  [Danio rerio]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2132
0.0
89%
100%
100%

mmu:22143
Tuba2; tubulin, alpha 2  [Mus musculus]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2132
0.0
88%
100%
100%

hsa:7846
TUBA3; tubulin, alpha 3  [Homo sapiens]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2128
0.0
88%
100%
100%

mmu:22142
Tuba1; tubulin, alpha 1  [Mus musculus]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2128
0.0
88%
100%
100%

rno:64158
Tuba1; alpha-tubulin  [Rattus norvegicus]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2128
0.0
88%
100%
100%

gi|89267206|emb|CAJ81407.1|
tubulin, alpha 2 [Xenopus tropicalis]  [no tax name]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2127
0.0
98%
98%
96%

mmu:22146
Tuba6; tubulin, alpha 6  [Mus musculus]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2123
0.0
88%
100%
100%

gi|47122943|gb|AAH70609.1|
MGC81323 protein [Xenopus laevis]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2122
0.0
96%
97%
97%

rno:300218
LOC300218; hypothetical gene supported by NM_022298; NM_022298; V01227  [Rattus norvegicus]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2121
0.0
88%
79%
100%