Xenopus tropicalis v4.1

Xenopus tropicalis v4.1

TRANSCRIPT ANNOTATION

Xentr4/scaffold_676:63564-66967 fgenesh1_kg.C_scaffold_676000002 Hide

Attribute

Value

Creator

Action

Name

Description

Model Notes

Defline

Disposition

Literature

Assessment

?

Note

Creator

Action

EST evidence

Needs GO

Evidence

Type

Creator

Action

FUNCTIONAL (PROTEIN) ANNOTATION

User-Assigned Ontology

ASPECT

DETAILS

function

process

component

enzyme

kog

Automatic Ontology and Best Protein Alignments for transcript 152491

Automatic Ontology

ASPECT

GO/EC

SUPPORT

Action

function

8270 Interacting selectively with zinc (Zn) ions.

IPR000315 Zn-finger, B-box

component

5622 The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.	IPR000315 Zn-finger, B-box
	IPR003649 B-box, C-terminal
	IPR000315 Zn-finger, B-box

High Scoring Alignments
gi\|89273989\|emb\|CAJ81509.1\| novel C3HC4 type (RING finger) and B-box zinc finger protein with SPRY domain [Xenopus tropicalis] [no tax name] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		2048	0.0	72%	100%	100%

gi\|46250277\|gb\|AAH68644.1\| LOC397846 protein [Xenopus laevis] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		2002	0.0	68%	100%	100%

gi\|1488045\|gb\|AAB05872.1\| RING finger protein [Xenopus laevis] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		1842	0.0	60%	100%	100%

gi\|55153744\|gb\|AAH85224.1\| LOC495519 protein [Xenopus laevis] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		1797	0.0	62%	98%	99%

gi\|62089476\|gb\|AAH92146.1\| Unknown (protein for IMAGE:5511100) [Xenopus laevis] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		1781	0.0	57%	100%	98%

gi\|47939821\|gb\|AAH72302.1\| LOC432183 protein [Xenopus laevis] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		1731	0.0	59%	98%	98%

gi\|62185614\|gb\|AAH92244.1\| Unknown (protein for IMAGE:5513601) [Xenopus laevis] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		1615	0.0	59%	98%	97%

gi\|62471527\|gb\|AAH93542.1\| LOC494681 protein [Xenopus laevis] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		1552	0.0	53%	93%	98%

gi\|52138929\|gb\|AAH82671.1\| LOC494681 protein [Xenopus laevis] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		1549	0.0	53%	93%	98%

gi\|76780169\|gb\|AAI06669.1\| LOC494681 protein [Xenopus laevis] [no tax name] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		1549	0.0	53%	98%	98%