Xenopus tropicalis v4.1

Xenopus tropicalis v4.1

TRANSCRIPT ANNOTATION

Xentr4/scaffold_101:2298417-2322625 fgenesh1_pg.C_scaffold_101000100 Hide

Attribute

Value

Creator

Action

Name

Description

Model Notes

Defline

Disposition

Literature

Assessment

?

Note

Creator

Action

EST evidence

Needs GO

Evidence

Type

Creator

Action

FUNCTIONAL (PROTEIN) ANNOTATION

User-Assigned Ontology

ASPECT

DETAILS

function

process

component

enzyme

kog

Automatic Ontology and Best Protein Alignments for transcript 164182

Automatic Ontology

ASPECT

GO/EC

SUPPORT

Action

High Scoring Alignments
hsa:10193 RNF41; ring finger protein 41 [Homo sapiens] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		1622	0.0	95%	100%	100%

rno:362814 LOC362814; similar to ring finger protein 41; hypothetical SBBI03 protein [Rattus norvegicus] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		1611	0.0	95%	100%	100%

dme:CG17033-PA CG17033; CG17033-PA [Drosophila melanogaster] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		1072	0.0	58%	100%	99%

dme:CG9014-PA CG9014; CG9014 gene product from transcript CG9014-RA [Drosophila melanogaster] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		788	0.0	45%	98%	100%

gi\|62288902\|sp\|Q69ZS0\|PZRN3_MOUSE PDZ domain-containing RING finger protein 3 (Semaphorin cytoplasmic domain-associated protein 3) (SEMACAP3 protein) [Mus musculus] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		246	2.3E-25	34%	19%	54%

hsa:23024 PDZRN3; PDZ domain containing RING finger 3 [Homo sapiens] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		240	1.9E-24	32%	17%	53%

gi\|62288872\|sp\|P68907\|PZRN3_RAT PDZ domain-containing RING finger protein 3 (Semaphorin cytoplasmic domain-associated protein 3) (SEMACAP3 protein) [Rattus norvegicus] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		240	1.5E-24	33%	19%	54%

gi\|62288903\|sp\|Q9UPQ7\|PZRN3_HUMAN PDZ domain-containing RING finger protein 3 (Ligand of Numb-protein X 3) (Semaphorin cytoplasmic domain-associated protein 3) (SEMACAP3 protein) [Homo sapiens] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		240	1.5E-24	32%	19%	53%

rno:312607 LOC312607; similar to semaphorin cytoplasmic domain-associated protein 3A [Rattus norvegicus] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		238	3.6E-24	31%	18%	53%

gi\|60392898\|sp\|Q6ZMN7\|PZRN4_HUMAN PDZ domain-containing RING finger protein 4 (Ligand of Numb-protein X 4) (SEMACAP3-like protein) [Homo sapiens] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		213	8.1E-21	7%	77%	52%