Xenopus tropicalis v4.1
TRANSCRIPT ANNOTATION 
Xentr4/scaffold_30:2652256-2659070 fgenesh1_pm.C_scaffold_30000034 Hide 
AttributeValueCreatorAction
Name  
Description  
Model Notes  
Defline  
Disposition  
Literature  
Assessment
 ? 
NoteCreatorAction
EST evidence  
Needs GO  
EvidenceTypeCreatorAction
 

FUNCTIONAL (PROTEIN) ANNOTATION
User-Assigned Ontology       
ASPECT DETAILS
function
      
process
      
component
      
enzyme
      
kog
      
Automatic Ontology and Best Protein Alignments for transcript 197722
Automatic Ontology
ASPECT
GO/ECSUPPORTAction
process
6909  The process whereby phagocytes engulf external particulate material. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles.IPR006816  Engulfment and cell motility, ELM 
6915  A form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases, whose actions dismantle the cell and result in cell death. Apoptosis begins internally with condensation and subsequent fragmentation of the cell nucleus (blebbing) while the plasma membrane remains intact. Other characteristics of apoptosis include DNA fragmentation and the exposition of phosphatidylserine.IPR006816  Engulfment and cell motility, ELM 
component
5856  Any of the various filamentous elements within the cytoplasm of eukaryotic cells that remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, and the microtrabecular lattice. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.IPR006816  Engulfment and cell motility, ELM 

High Scoring Alignments 

gi|47125209|gb|AAH70754.1|
MGC83768 protein [Xenopus laevis]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
1718
0.0
91%
95%
95%

gi|68382773|ref|XP_695896.1|
PREDICTED: similar to MGC83768 protein [Danio rerio]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
1048
0.0
55%
86%
90%

gi|10438207|dbj|BAB15195.1|
unnamed protein product [Homo sapiens]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
956
0.0
57%
78%
81%

gi|55597033|ref|XP_515583.1|
PREDICTED: hypothetical protein XP_515583 [Pan troglodytes]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
955
0.0
48%
81%
81%

gi|73980392|ref|XP_852398.1|
PREDICTED: similar to RNA binding motif and ELMO domain 1 isoform 2 [Canis familiaris]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
955
0.0
45%
89%
93%

gi|61553158|gb|AAX46359.1|
RNA binding motif and ELMO domain 1 [Bos taurus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
954
0.0
48%
90%
94%

gi|15012167|gb|AAH10991.1|
RBED1 protein [Homo sapiens]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
949
0.0
57%
78%
81%

gi|16740617|gb|AAH16193.1|
RNA binding motif and ELMO domain 1 [Mus musculus] >gi|26350919|dbj|BAC39096.1| unnamed protein product [Mus musculus] >gi|26339822|dbj|BAC33574.1| unnamed protein product [Mus musculus] >gi|21450313|ref|NP_659166.1| RNA binding motif and ELMO domain 1 [Mus musculus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
949
0.0
47%
88%
92%

gi|85662660|gb|AAI12325.1|
Unknown (protein for MGC:111036) [Homo sapiens]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
949
0.0
56%
78%
81%

gi|45708493|gb|AAH01942.1|
RNA binding motif and ELMO domain 1 [Homo sapiens] >gi|17391464|gb|AAH18666.1| RNA binding motif and ELMO domain 1 [Homo sapiens] >gi|21362032|ref|NP_115589.2| RNA binding motif and ELMO domain 1 [Homo sapiens] >gi|62988740|gb|AAY24127.1| unknown [Homo sapiens]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
897
0.0
57%
71%
76%