Xenopus tropicalis v4.1

TRANSCRIPT ANNOTATION

Xentr4/scaffold_100:364825-386224 estExt_Genewise1.C_1000050 Hide

Attribute

Value

Creator

Action

Name

Description

Model Notes

Defline

Disposition

Literature

Assessment

Note

Creator

Action

EST evidence

Needs GO

Evidence

Type

Creator

Action

FUNCTIONAL (PROTEIN) ANNOTATION

User-Assigned Ontology

ASPECT

DETAILS

function

process

component

enzyme

kog

Automatic Ontology and Best Protein Alignments for transcript 272084

Automatic Ontology

ASPECT

GO/EC

SUPPORT

Action

function

3677 Interacting selectively with DNA (deoxyribonucleic acid).	IPR000513 5'3'-Exonuclease N- and I-domain
4518 Catalysis of the hydrolysis of ester linkages within nucleic acids.	IPR006086 XPG I
	IPR006085 XPG N-terminal
	IPR000513 5'3'-Exonuclease N- and I-domain
	IPR006086 XPG I
	IPR006085 XPG N-terminal
	IPR006084 DNA repair protein (XPGC)/yeast Rad

process

6281 The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.	IPR006084 DNA repair protein (XPGC)/yeast Rad
	IPR006085 XPG N-terminal
	IPR006086 XPG I
	IPR006085 XPG N-terminal

High Scoring Alignments
gi\|47077235\|dbj\|BAD18538.1\| unnamed protein product [Homo sapiens] >gi\|47271493\|ref\|NP_872431.2\| hypothetical protein LOC348654 [Homo sapiens] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1708	0.0	43%	67%	69%

gi\|26326927\|dbj\|BAC27207.1\| unnamed protein product [Mus musculus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1707	0.0	40%	75%	78%

gi\|60334795\|gb\|AAH90653.1\| RIKEN cDNA 5830483C08 gene [Mus musculus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1707	0.0	40%	75%	78%

gi\|31542023\|ref\|NP_796305.2\| hypothetical protein LOC209334 [Mus musculus] >gi\|26326997\|dbj\|BAC27242.1\| unnamed protein product [Mus musculus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1706	0.0	39%	75%	78%

gi\|73980577\|ref\|XP_540093.2\| PREDICTED: similar to CG10670-PA [Canis familiaris] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1638	0.0	66%	51%	52%

gi\|50745055\|ref\|XP_419963.1\| PREDICTED: similar to RIKEN cDNA 5830483C08 gene [Gallus gallus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1546	0.0	61%	49%	52%

rno:298884 LOC298884; similar to CG10670-PA [Rattus norvegicus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1513	0.0	43%	88%	86%

gi\|74196654\|dbj\|BAE34428.1\| unnamed protein product [Mus musculus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1457	0.0	37%	83%	70%

gi\|62650482\|ref\|XP_233966.3\| PREDICTED: similar to RIKEN cDNA 5830483C08 gene [Rattus norvegicus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1448	0.0	37%	61%	69%

gi\|72101743\|ref\|XP_793916.1\| PREDICTED: similar to CG10670-PA [Strongylocentrotus purpuratus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	857	0.0	31%	29%	51%