Xenopus tropicalis v4.1

TRANSCRIPT ANNOTATION

Xentr4/scaffold_168:717398-760106 estExt_Genewise1.C_1680040 Hide

Attribute

Value

Creator

Action

Name

Description

Model Notes

Defline

Disposition

Literature

Assessment

Note

Creator

Action

EST evidence

Needs GO

Evidence

Type

Creator

Action

FUNCTIONAL (PROTEIN) ANNOTATION

User-Assigned Ontology

ASPECT

DETAILS

function

process

component

enzyme

kog

Automatic Ontology and Best Protein Alignments for transcript 275283

Automatic Ontology

ASPECT

GO/EC

SUPPORT

Action

function

3676 Interacting selectively with any nucleic acid.	IPR007087 Zn-finger, C2H2 type
8270 Interacting selectively with zinc (Zn) ions.	IPR007087 Zn-finger, C2H2 type

component

5634 A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

IPR007087 Zn-finger, C2H2 type

High Scoring Alignments
rno:361004 LOC361004; similar to KIAA0913 protein [Rattus norvegicus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	6198	0.0	73%	92%	100%

gi\|73952958\|ref\|XP_536393.2\| PREDICTED: similar to CG32542-PA isoform 2 [Canis familiaris] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	6141	0.0	66%	92%	100%

gi\|55633991\|ref\|XP_507850.1\| PREDICTED: similar to KIAA0913 protein [Pan troglodytes] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	6089	5.94112E-14	64%	95%	100%

gi\|76656669\|ref\|XP_612310.2\| PREDICTED: similar to CG32542-PA [Bos taurus] [no tax name] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	6072	0.0	63%	95%	100%

gi\|62661017\|ref\|XP_341280.2\| PREDICTED: similar to 2310021P13Rik protein [Rattus norvegicus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	6066	0.0	62%	92%	100%

gi\|54887414\|gb\|AAH85161.1\| 2310021P13Rik protein [Mus musculus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	6032	6.1416E-14	65%	95%	100%

gi\|74184528\|dbj\|BAE27886.1\| unnamed protein product [Mus musculus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	6002	5.78817E-14	60%	92%	100%

gi\|50749386\|ref\|XP_421614.1\| PREDICTED: similar to KIAA0913 protein [Gallus gallus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	5156	0.0	67%	89%	80%

gi\|47211602\|emb\|CAF94538.1\| unnamed protein product [Tetraodon nigroviridis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	4940	0.0	39%	93%	100%

gi\|68437873\|ref\|XP_690716.1\| PREDICTED: similar to 2310021P13Rik protein [Danio rerio] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	4715	0.0	47%	63%	96%