Xenopus tropicalis v4.1
TRANSCRIPT ANNOTATION 
Xentr4/scaffold_5:1596219-1601217 e_gw1.5.28.1 Hide 
AttributeValueCreatorAction
Name  
Description  
Model Notes  
Defline  
Disposition  
Literature  
Assessment
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NoteCreatorAction
EST evidence  
Needs GO  
EvidenceTypeCreatorAction
 

FUNCTIONAL (PROTEIN) ANNOTATION
User-Assigned Ontology       
ASPECT DETAILS
function
      
process
      
component
      
enzyme
      
kog
      
Automatic Ontology and Best Protein Alignments for transcript 304029
Automatic Ontology
ASPECT
GO/ECSUPPORTAction
function
3735  The action of a molecule that contributes to the structural integrity of the ribosome.IPR000754  Ribosomal protein S9 
process
6412  The formation from simpler components of a protein, rather than of proteins in general.IPR000754  Ribosomal protein S9 
component
5622  The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.IPR000754  Ribosomal protein S9 
5840  An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.IPR000754  Ribosomal protein S9 

High Scoring Alignments 

gi|76780311|gb|AAI06274.1|
Unknown (protein for MGC:130741) [Xenopus laevis] >gi|58331994|ref|NP_001011146.1| hypothetical protein LOC496563 [Xenopus tropicalis] >gi|89272448|emb|CAJ83293.1| ribosomal protein S16 [Xenopus tropicalis] >gi|54261589|gb|AAH84534.1| Hypothetical LOC496563 [Xenopus tropicalis]  [no tax name]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
743
0.0
100%
100%
99%

gi|13124861|gb|AAK11731.1|
ribosomal protein S16 [Heteropneustes fossilis] >gi|54039448|sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
734
0.0
99%
100%
99%

gi|50728374|ref|XP_416113.1|
PREDICTED: similar to 40S ribosomal protein S16 [Gallus gallus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
734
0.0
98%
100%
99%

gi|15294045|gb|AAK95199.1|
40S ribosomal protein S16 [Ictalurus punctatus] >gi|54039445|sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
731
0.0
98%
100%
99%

gi|73948356|ref|XP_533674.2|
PREDICTED: similar to 40S ribosomal protein S16 [Canis familiaris]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
730
0.0
96%
100%
99%

gi|52078405|gb|AAH82286.1|
Rps16 protein [Mus musculus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
728
0.0
97%
93%
99%

gi|39850096|gb|AAH64030.1|
Rps16 protein [Rattus norvegicus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
728
0.0
97%
91%
99%

gi|55649139|ref|XP_512651.1|
PREDICTED: similar to ribosomal protein S16; 40S ribosomal protein S16 [Pan troglodytes] >gi|14044116|gb|AAH07977.1| Ribosomal protein S16 [Homo sapiens] >gi|4506691|ref|NP_001011.1| ribosomal protein S16 [Homo sapiens] >gi|13279236|gb|AAH04324.1| Ribosomal protein S16 [Homo sapiens] >gi|74354274|gb|AAI02216.1| Similar to 40S ribosomal protein S16 [Bos taurus] >gi|74178168|dbj|BAE29871.1| unnamed protein product [Mus musculus] >gi|74211995|dbj|BAE40167.1| unnamed protein product [Mus musculus] >gi|74142038|dbj|BAE41081.1| unnamed protein product [Mus musculus] >gi|12846230|dbj|BAB27083.1| unnamed protein product [Mus musculus] >gi|12846181|dbj|BAB27062.1| unnamed protein product [Mus musculus] >gi|26353788|dbj|BAC40524.1| unnamed protein product [Mus musculus] >gi|26353422|dbj|BAC40341.1| unnamed protein product [Mus musculus] >gi|26350881|dbj|BAC39077.1| unnamed protein product [Mus musculus] >gi|12859587|dbj|BAB31702.1| unnamed protein product [Mus musculus] >gi|12846934|dbj|BAB27368.1| unnamed protein product [Mus musculus] >gi|60655875|gb|AAX32501.1| ribosomal protein S16 [synthetic construct] >gi|57714|emb|CAA35662.1| unnamed protein product [Rattus rattus] >gi|54039370|sp|P62250|RS16_RAT 40S ribosomal protein S16 >gi|54039372|sp|P14131|RS16_MOUSE 40S ribosomal protein S16 >gi|50403607|sp|P62249|RS16_HUMAN 40S ribosomal protein S16 >gi|60394813|sp|Q29201|RS16_PIG 40S ribosomal protein S16 >gi|75812950|ref|NP_001028796.1| similar to 40S ribosomal protein S16 [Bos taurus] >gi|338447|gb|AAA60583.1| RPS16 >gi|17932976|dbj|BAB79479.1| ribosomal protein S16 [Homo sapiens]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
728
0.0
97%
100%
99%

gi|60652773|gb|AAX29081.1|
ribosomal protein S16 [synthetic construct]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
728
0.0
97%
99%
99%

gi|60334810|gb|AAH90618.1|
Rps16 protein [Mus musculus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
728
0.0
97%
85%
99%