Xenopus tropicalis v4.1
TRANSCRIPT ANNOTATION 
Xentr4/scaffold_122:454452-456636 e_gw1.122.14.1 Hide 
AttributeValueCreatorAction
Name  
Description  
Model Notes  
Defline  
Disposition  
Literature  
Assessment
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NoteCreatorAction
EST evidence  
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EvidenceTypeCreatorAction
 

FUNCTIONAL (PROTEIN) ANNOTATION
User-Assigned Ontology       
ASPECT DETAILS
function
      
process
      
component
      
enzyme
      
kog
      
Automatic Ontology and Best Protein Alignments for transcript 334612
Automatic Ontology
ASPECT
GO/ECSUPPORTAction
function
3735  The action of a molecule that contributes to the structural integrity of the ribosome.IPR001648  Ribosomal protein S18 
process
6412  The formation from simpler components of a protein, rather than of proteins in general.IPR001648  Ribosomal protein S18 
component
5622  The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.IPR001648  Ribosomal protein S18 
5840  An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.IPR001648  Ribosomal protein S18 

High Scoring Alignments 

gi|62859095|ref|NP_001017092.1|
mitochondrial ribosomal protein S18C [Xenopus tropicalis]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
485
0.0
100%
70%
97%

gi|89266949|emb|CAJ83647.1|
novel protein similar to mitochondrial ribosomal protein S18C [Xenopus tropicalis]  [no tax name]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
485
0.0
100%
67%
97%

gi|57109098|ref|XP_535635.1|
PREDICTED: similar to 28S ribosomal protein S18c, mitochondrial precursor (MRP-S18-c) (Mrps18c) (MRP-S18-1) isoform 1 [Canis familiaris]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
381
3.2E-44
80%
60%
95%

gi|74001790|ref|XP_859432.1|
PREDICTED: similar to 28S ribosomal protein S18c, mitochondrial precursor (MRP-S18-c) (Mrps18c) (MRP-S18-1) isoform 2 [Canis familiaris]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
378
8.4E-44
82%
93%
91%

gi|55622668|ref|XP_517249.1|
PREDICTED: similar to 28S ribosomal protein S18c, mitochondrial precursor (MRP-S18-c) (Mrps18c) (MRP-S18-1) (CGI-134) [Pan troglodytes] >gi|13528768|gb|AAH05186.1| Mitochondrial ribosomal protein S18C [Homo sapiens] >gi|4929737|gb|AAD34129.1| CGI-134 protein [Homo sapiens] >gi|24212202|sp|Q9Y3D5|RT18C_HUMAN 28S ribosomal protein S18c, mitochondrial precursor (MRP-S18-c) (Mrps18c) (MRP-S18-1) >gi|7705630|ref|NP_057151.1| mitochondrial ribosomal protein S18C [Homo sapiens]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
377
1.16E-43
78%
61%
95%

gi|50746587|ref|XP_420566.1|
PREDICTED: similar to 28S ribosomal protein S18c, mitochondrial precursor (MRP-S18-c) (Mrps18c) (MRP-S18-1) (CGI-134) [Gallus gallus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
377
1.16E-43
73%
60%
95%

gi|76670875|ref|XP_869531.1|
PREDICTED: similar to 28S ribosomal protein S18c, mitochondrial precursor (MRP-S18-c) (Mrps18c) (MRP-S18-1) isoform 1 [Bos taurus] >gi|86827491|gb|AAI12819.1| Unknown (protein for MGC:136995) [Bos taurus]  [no tax name]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
370
1.12E-42
78%
60%
95%

gi|76670871|ref|XP_878033.1|
PREDICTED: similar to 28S ribosomal protein S18c, mitochondrial precursor (MRP-S18-c) (Mrps18c) (MRP-S18-1) isoform 3 [Bos taurus] >gi|76670869|ref|XP_877940.1| PREDICTED: similar to 28S ribosomal protein S18c, mitochondrial precursor (MRP-S18-c) (Mrps18c) (MRP-S18-1) isoform 2 [Bos taurus]  [no tax name]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
367
2.957E-42
80%
93%
91%

gi|12835208|dbj|BAB23188.1|
unnamed protein product [Mus musculus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
363
1.0796E-41
76%
60%
95%

gi|27692755|ref|XP_214003.1|
PREDICTED: similar to Mitochondrial ribosomal protein S18C [Rattus norvegicus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
363
1.0796E-41
77%
60%
95%