Xenopus tropicalis v4.1
TRANSCRIPT ANNOTATION 
Xentr4/scaffold_201:212985-266706 e_gw1.201.18.1 Hide 
AttributeValueCreatorAction
Name  
Description  
Model Notes  
Defline  
Disposition  
Literature  
Assessment
 ? 
NoteCreatorAction
EST evidence  
Needs GO  
EvidenceTypeCreatorAction
 

FUNCTIONAL (PROTEIN) ANNOTATION
User-Assigned Ontology       
ASPECT DETAILS
function
      
process
      
component
      
enzyme
      
kog
      
Automatic Ontology and Best Protein Alignments for transcript 348627
Automatic Ontology
ASPECT
GO/ECSUPPORTAction
function
3676  Interacting selectively with any nucleic acid.IPR004088  KH, type 1 

High Scoring Alignments 

rno:170843
Slm1; Sam68-like mammalian protein 1  [Rattus norvegicus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
1052
0.0
72%
79%
100%

gi|50744978|ref|XP_426201.1|
PREDICTED: similar to Sam68-like mammalian protein 1 [Gallus gallus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
1024
0.0
68%
49%
100%

gi|56208526|emb|CAI21649.1|
OTTHUMP00000016670 [Homo sapiens] >gi|55959395|emb|CAI15262.1| OTTHUMP00000016670 [Homo sapiens] >gi|55664000|emb|CAH70882.1| OTTHUMP00000016670 [Homo sapiens] >gi|55958582|emb|CAI14907.1| OTTHUMP00000016670 [Homo sapiens] >gi|56204318|emb|CAI19748.1| OTTHUMP00000016670 [Homo sapiens] >gi|56202803|emb|CAI19918.1| OTTHUMP00000016670 [Homo sapiens]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
933
0.0
62%
79%
100%

gi|21706532|gb|AAH34043.1|
KH domain-containing, RNA-binding, signal transduction-associated protein 2 [Homo sapiens] >gi|22749381|ref|NP_689901.1| KH domain-containing, RNA-binding, signal transduction-associated protein 2 [Homo sapiens]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
927
0.0
62%
79%
100%

gi|19879663|gb|AAL77219.1|
Sam68-like mammalian protein 1 [Homo sapiens]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
900
0.0
59%
79%
100%

gi|73973467|ref|XP_538980.2|
PREDICTED: similar to KH domain-containing, RNA-binding, signal transduction-associated protein 2 [Canis familiaris]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
897
0.0
59%
79%
100%

gi|18959266|ref|NP_579852.1|
KH domain-containing, RNA-binding, signal transduction-associated protein 2 [Rattus norvegicus] >gi|15824475|gb|AAL09360.1| nuclear RNA binding protein SLM-1 [Rattus norvegicus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
890
0.0
57%
79%
100%

gi|18875400|ref|NP_573498.1|
KH domain-containing, RNA-binding, signal transduction-associated protein 2 [Mus musculus] >gi|4426613|gb|AAD20451.1| SLM-1 [Mus musculus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
889
0.0
57%
79%
100%

hsa:10656
KHDRBS3; KH domain containing, RNA binding, signal transduction associated 3  [Homo sapiens]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
814
0.0
62%
80%
100%

mmu:13992
Khdrbs3; KH domain containing, RNA binding, signal transduction associated 3  [Mus musculus]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
813
0.0
62%
80%
100%