Skip To Main Content
JGI Home
Genome Portal
MycoCosm
PhycoCosm
Login
Xenopus tropicalis v4.1
Search
BLAST
Browse
Annotations
Gene Ontology
PFAM Domains
KEGG
KOG
Transcription Factors
Download
Info
Home
Status
HELP!
TRANSCRIPT ANNOTATION
Xentr4/scaffold_224:1185473-1196531
e_gw1.224.99.1
Hide
Attribute
Value
Creator
Action
Name
Description
Model Notes
Defline
Disposition
Literature
Assessment
?
Note
Creator
Action
EST evidence
Needs GO
Evidence
Type
Creator
Action
FUNCTIONAL (PROTEIN) ANNOTATION
User-Assigned Ontology
ASPECT
DETAILS
function
 
 
process
 
 
component
 
 
enzyme
 
 
kog
 
 
Automatic Ontology and Best Protein Alignments for transcript 351718
Automatic Ontology
ASPECT
GO/EC
SUPPORT
Action
process
6886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
IPR000804 Clathrin adaptor complex, small chain
component
30125 A clathrin coat found on a vesicle.
IPR000804 Clathrin adaptor complex, small chain
High Scoring Alignments
gi|62857949|ref|NP_001016579.1|
adaptor-related protein complex AP-1, sigma 3 subunit [Xenopus tropicalis] >gi|89272098|emb|CAJ81750.1| adaptor-related protein complex 1, sigma 3 subunit [Xenopus tropicalis]
view alignment
view info
GO/EC Classification
Score
Evalue
% id
% target
% model
796
0.0
100%
99%
95%
gi|49257373|gb|AAH73025.1|
LOC443609 protein [Xenopus laevis]
view alignment
view info
GO/EC Classification
Score
Evalue
% id
% target
% model
739
0.0
92%
100%
95%
gi|76779461|gb|AAI06259.1|
Unknown (protein for MGC:130712) [Xenopus laevis] [no tax name]
view alignment
view info
GO/EC Classification
Score
Evalue
% id
% target
% model
739
0.0
92%
99%
95%
gi|76610718|ref|XP_612669.2|
PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3 isoform 1 [Bos taurus] [no tax name]
view alignment
view info
GO/EC Classification
Score
Evalue
% id
% target
% model
690
0.0
84%
81%
95%
gi|74005808|ref|XP_536088.2|
PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3 [Canis familiaris]
view alignment
view info
GO/EC Classification
Score
Evalue
% id
% target
% model
688
0.0
84%
97%
95%
gi|88703051|ref|NP_001034658.1|
adaptor-related protein complex 1, sigma 3 subunit [Homo sapiens]
view alignment
view info
GO/EC Classification
Score
Evalue
% id
% target
% model
687
0.0
84%
99%
95%
gi|55616713|ref|XP_516121.1|
PREDICTED: similar to WD repeat and FYVE domain containing 1; phosphoinositide-binding protein SR1; WD40 and FYVE domain containing 1 [Pan troglodytes]
view alignment
view info
GO/EC Classification
Score
Evalue
% id
% target
% model
687
0.0
84%
24%
95%
gi|71725353|ref|NP_001025179.1|
adaptor-related protein complex AP-1, sigma 3 subunit [Gallus gallus]
view alignment
view info
GO/EC Classification
Score
Evalue
% id
% target
% model
686
0.0
83%
99%
95%
gi|62655269|ref|XP_576597.1|
PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3 [Rattus norvegicus]
view alignment
view info
GO/EC Classification
Score
Evalue
% id
% target
% model
679
0.0
81%
99%
95%
gi|32449706|gb|AAH54111.1|
Adaptor-related protein complex AP-1, sigma 3 [Mus musculus] >gi|81912002|sp|Q7TN05|AP1S3_MOUSE AP-1 complex subunit sigma-3 (Adapter-related protein complex 1 sigma-1C subunit) (Sigma-adaptin 1C) (Adaptor protein complex AP-1 sigma-1C subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1C subunit) (Clathrin assembly protein complex 1 sigma-1C small chain) (Sigma 1C subunit of AP-1 clathrin) >gi|67514292|gb|AAH98237.1| Ap1s3 protein [Mus musculus] >gi|35215317|ref|NP_898848.1| adaptor-related protein complex AP-1, sigma 3 [Mus musculus]
view alignment
view info
GO/EC Classification
Score
Evalue
% id
% target
% model
676
0.0
80%
99%
95%