Xenopus tropicalis v4.1
TRANSCRIPT ANNOTATION 
Xentr4/scaffold_224:1185473-1196531 e_gw1.224.99.1 Hide 
AttributeValueCreatorAction
Name  
Description  
Model Notes  
Defline  
Disposition  
Literature  
Assessment
 ? 
NoteCreatorAction
EST evidence  
Needs GO  
EvidenceTypeCreatorAction
 

FUNCTIONAL (PROTEIN) ANNOTATION
User-Assigned Ontology       
ASPECT DETAILS
function
      
process
      
component
      
enzyme
      
kog
      
Automatic Ontology and Best Protein Alignments for transcript 351718
Automatic Ontology
ASPECT
GO/ECSUPPORTAction
process
6886  The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.IPR000804  Clathrin adaptor complex, small chain 
component
30125  A clathrin coat found on a vesicle.IPR000804  Clathrin adaptor complex, small chain 

High Scoring Alignments 

gi|62857949|ref|NP_001016579.1|
adaptor-related protein complex AP-1, sigma 3 subunit [Xenopus tropicalis] >gi|89272098|emb|CAJ81750.1| adaptor-related protein complex 1, sigma 3 subunit [Xenopus tropicalis]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
796
0.0
100%
99%
95%

gi|49257373|gb|AAH73025.1|
LOC443609 protein [Xenopus laevis]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
739
0.0
92%
100%
95%

gi|76779461|gb|AAI06259.1|
Unknown (protein for MGC:130712) [Xenopus laevis]  [no tax name]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
739
0.0
92%
99%
95%

gi|76610718|ref|XP_612669.2|
PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3 isoform 1 [Bos taurus]  [no tax name]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
690
0.0
84%
81%
95%

gi|74005808|ref|XP_536088.2|
PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3 [Canis familiaris]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
688
0.0
84%
97%
95%

gi|88703051|ref|NP_001034658.1|
adaptor-related protein complex 1, sigma 3 subunit [Homo sapiens]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
687
0.0
84%
99%
95%

gi|55616713|ref|XP_516121.1|
PREDICTED: similar to WD repeat and FYVE domain containing 1; phosphoinositide-binding protein SR1; WD40 and FYVE domain containing 1 [Pan troglodytes]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
687
0.0
84%
24%
95%

gi|71725353|ref|NP_001025179.1|
adaptor-related protein complex AP-1, sigma 3 subunit [Gallus gallus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
686
0.0
83%
99%
95%

gi|62655269|ref|XP_576597.1|
PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3 [Rattus norvegicus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
679
0.0
81%
99%
95%

gi|32449706|gb|AAH54111.1|
Adaptor-related protein complex AP-1, sigma 3 [Mus musculus] >gi|81912002|sp|Q7TN05|AP1S3_MOUSE AP-1 complex subunit sigma-3 (Adapter-related protein complex 1 sigma-1C subunit) (Sigma-adaptin 1C) (Adaptor protein complex AP-1 sigma-1C subunit) (Golgi adaptor HA1/AP1 adaptin sigma-1C subunit) (Clathrin assembly protein complex 1 sigma-1C small chain) (Sigma 1C subunit of AP-1 clathrin) >gi|67514292|gb|AAH98237.1| Ap1s3 protein [Mus musculus] >gi|35215317|ref|NP_898848.1| adaptor-related protein complex AP-1, sigma 3 [Mus musculus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
676
0.0
80%
99%
95%