Xenopus tropicalis v4.1

TRANSCRIPT ANNOTATION

Xentr4/scaffold_579:608854-626511 e_gw1.579.4.1 Hide

Attribute

Value

Creator

Action

Name

Description

Model Notes

Defline

Disposition

Literature

Assessment

Note

Creator

Action

EST evidence

Needs GO

Evidence

Type

Creator

Action

FUNCTIONAL (PROTEIN) ANNOTATION

User-Assigned Ontology

ASPECT

DETAILS

function

process

component

enzyme

kog

Automatic Ontology and Best Protein Alignments for transcript 387746

Automatic Ontology

ASPECT

GO/EC

SUPPORT

Action

process

15031 The directed movement of proteins into, out of, within or between cells.

IPR007273 SCAMP

component

16021 Penetrating at least one phospholipid bilayer of a membrane. Also refers to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence spans the membrane.

IPR007273 SCAMP

High Scoring Alignments
rno:29521 Scamp1; secretory carrier membrane protein 1 [Rattus norvegicus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1577	0.0	89%	100%	100%

hsa:9522 SCAMP1; secretory carrier membrane protein 1 [Homo sapiens] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1556	0.0	88%	100%	100%

gi\|62857463\|ref\|NP_001017190.1\| secretory carrier membrane protein 1 [Xenopus tropicalis] >gi\|89272079\|emb\|CAJ81324.1\| secretory carrier membrane protein 1 [Xenopus tropicalis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1537	0.0	100%	100%	100%

gi\|73952189\|ref\|XP_859755.1\| PREDICTED: similar to Secretory carrier-associated membrane protein 1 (Secretory carrier membrane protein 1) isoform 3 [Canis familiaris] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1240	0.0	83%	93%	94%

gi\|41388954\|gb\|AAH65684.1\| Hypothetical protein LOC402992 [Danio rerio] >gi\|45387801\|ref\|NP_991255.1\| hypothetical protein LOC402992 [Danio rerio] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1237	0.0	70%	99%	99%

gi\|74215539\|dbj\|BAE21397.1\| unnamed protein product [Mus musculus] >gi\|74189507\|dbj\|BAE36767.1\| unnamed protein product [Mus musculus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1134	0.0	81%	99%	83%

gi\|47523562\|ref\|NP_999410.1\| secretory carrier membrane protein 1 [Sus scrofa] >gi\|3395572\|emb\|CAA11536.1\| secretory carrier membrane protein 1 [Sus scrofa] >gi\|47116963\|sp\|O77735\|SCAM1_PIG Secretory carrier-associated membrane protein 1 (Secretory carrier membrane protein 1) >gi\|3947737\|emb\|CAA75731.1\| secretory carrier membrane protein 1 [Sus scrofa] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1120	9.49257E-12	92%	77%	77%

gi\|73952191\|ref\|XP_536314.2\| PREDICTED: similar to Secretory carrier-associated membrane protein 1 (Secretory carrier membrane protein 1) isoform 1 [Canis familiaris] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1118	9.49257E-12	92%	77%	77%

gi\|73952187\|ref\|XP_859726.1\| PREDICTED: similar to Secretory carrier-associated membrane protein 1 (Secretory carrier membrane protein 1) isoform 2 [Canis familiaris] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1109	5.97577E-11	89%	77%	77%

gi\|74354094\|gb\|AAI02449.1\| Unknown (protein for MGC:127646) [Bos taurus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1107	9.49257E-12	91%	73%	77%