Xenopus tropicalis v4.1

TRANSCRIPT ANNOTATION

Xentr4/scaffold_677:120470-121860 e_gw1.677.154.1 Hide

Attribute

Value

Creator

Action

Name

Description

Model Notes

Defline

Disposition

Literature

Assessment

Note

Creator

Action

EST evidence

Needs GO

Evidence

Type

Creator

Action

FUNCTIONAL (PROTEIN) ANNOTATION

User-Assigned Ontology

ASPECT

DETAILS

function

process

component

enzyme

kog

Automatic Ontology and Best Protein Alignments for transcript 395939

Automatic Ontology

ASPECT

GO/EC

SUPPORT

Action

function

3676 Interacting selectively with any nucleic acid.

IPR001909 KRAB box

process

6355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.

IPR001909 KRAB box

component

5622 The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

IPR001909 KRAB box

High Scoring Alignments
gi\|89267379\|emb\|CAJ83058.1\| novel zinc finger protein [Xenopus tropicalis] [no tax name] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	953	0.0	97%	31%	100%

gi\|62858089\|ref\|NP_001016517.1\| zinc finger protein 160 [Xenopus tropicalis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	891	0.0	97%	30%	94%

gi\|141719\|sp\|P18751\|ZO71_XENLA Oocyte zinc finger protein XLCOF7.1 [Xenopus laevis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	593	0.0	66%	19%	93%

gi\|214957\|gb\|AAA50013.1\| zinc finger protein [Xenopus laevis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	593	0.0	66%	54%	93%

gi\|104023\|pir\|\|A33282 DNA-binding protein (clone XLcOF7.1) - African clawed frog (fragment) [Xenopus laevis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	593	0.0	66%	54%	93%

gi\|141659\|sp\|P18733\|ZG66_XENLA Gastrula zinc finger protein XLCGF66.1 [Xenopus laevis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	577	4.87662E-7	60%	31%	100%

gi\|214971\|gb\|AAA50020.1\| zinc finger protein [Xenopus laevis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	577	1.04675E-7	60%	63%	100%

gi\|214959\|gb\|AAA50014.1\| zinc finger protein [Xenopus laevis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	536	0.0	76%	41%	70%

gi\|104024\|pir\|\|B33282 DNA-binding protein (clone XLcOF7.2) - African clawed frog (fragment) [Xenopus laevis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	536	0.0	76%	41%	70%

gi\|141720\|sp\|P18752\|ZO72_XENLA Oocyte zinc finger protein XLCOF7.2 [Xenopus laevis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	536	0.0	76%	32%	70%