Xenopus tropicalis v4.1

TRANSCRIPT ANNOTATION

Xentr4/scaffold_808:252808-254055 e_gw1.808.29.1 Hide

Attribute

Value

Creator

Action

Name

Description

Model Notes

Defline

Disposition

Literature

Assessment

Note

Creator

Action

EST evidence

Needs GO

Evidence

Type

Creator

Action

FUNCTIONAL (PROTEIN) ANNOTATION

User-Assigned Ontology

ASPECT

DETAILS

function

process

component

enzyme

kog

Automatic Ontology and Best Protein Alignments for transcript 404958

Automatic Ontology

ASPECT

GO/EC

SUPPORT

Action

function

3676 Interacting selectively with any nucleic acid.	IPR007087 Zn-finger, C2H2 type
5515 Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	IPR000210 BTB/POZ
8270 Interacting selectively with zinc (Zn) ions.	IPR007087 Zn-finger, C2H2 type

component

5634 A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

IPR007087 Zn-finger, C2H2 type

High Scoring Alignments
gi\|62858951\|ref\|NP_001016018.1\| hypothetical protein LOC548772 [Xenopus tropicalis] >gi\|89271351\|emb\|CAJ83455.1\| zinc finger and BTB domain containing 26 [Xenopus tropicalis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2104	0.0	100%	100%	100%

gi\|50757129\|ref\|XP_415392.1\| PREDICTED: similar to KIAA1572 protein [Gallus gallus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1609	0.0	67%	54%	96%

gi\|55632237\|ref\|XP_520241.1\| PREDICTED: similar to zinc finger protein 483; zinc finger protein 481 [Pan troglodytes] >gi\|18141299\|ref\|NP_065975.1\| zinc finger protein 483 [Homo sapiens] >gi\|18028090\|gb\|AAL55969.1\| bioref [Homo sapiens] >gi\|17511795\|gb\|AAH18748.1\| Zinc finger protein 483 [Homo sapiens] >gi\|20177845\|sp\|Q9HCK0\|ZBT26_HUMAN Zinc finger and BTB domain-containing protein 26 (Zinc finger protein 481) (Zinc finger protein Bioref) view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1590	0.0	66%	91%	97%

gi\|10047209\|dbj\|BAB13398.1\| KIAA1572 protein [Homo sapiens] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1590	0.0	66%	82%	97%

gi\|73968232\|ref\|XP_548463.2\| PREDICTED: similar to zinc finger protein 483 [Canis familiaris] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1590	0.0	66%	75%	97%

gi\|76630529\|ref\|XP_592371.2\| PREDICTED: similar to zinc finger protein 483 [Bos taurus] [no tax name] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1590	0.0	66%	55%	97%

gi\|62645027\|ref\|XP_231250.3\| PREDICTED: similar to zinc finger protein 483 [Rattus norvegicus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1585	0.0	64%	56%	97%

gi\|80479170\|gb\|AAI09351.1\| Zinc finger protein 483 [Mus musculus] >gi\|80478402\|gb\|AAI09350.1\| Zinc finger protein 483 [Mus musculus] >gi\|71037369\|ref\|NP_950190.2\| zinc finger protein 483 [Mus musculus] >gi\|38614316\|gb\|AAH60655.1\| Zinc finger protein 483 [Mus musculus] [no tax name] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1582	0.0	64%	92%	97%

gi\|26336619\|dbj\|BAC31992.1\| unnamed protein product [Mus musculus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1582	0.0	64%	89%	97%

gi\|50510995\|dbj\|BAD32483.1\| mKIAA1572 protein [Mus musculus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1582	0.0	64%	87%	97%