Xenopus tropicalis v4.1

TRANSCRIPT ANNOTATION

Xentr4/scaffold_1464:41318-47759 gw1.1464.14.1 Hide

Attribute

Value

Creator

Action

Name

Description

Model Notes

Defline

Disposition

Literature

Assessment

Note

Creator

Action

EST evidence

Needs GO

Evidence

Type

Creator

Action

FUNCTIONAL (PROTEIN) ANNOTATION

User-Assigned Ontology

ASPECT

DETAILS

function

process

component

enzyme

kog

Automatic Ontology and Best Protein Alignments for transcript 41205

Automatic Ontology

ASPECT

GO/EC

SUPPORT

Action

process

6817 The directed movement of phosphate into, out of, within or between cells.

IPR008160 Collagen triple helix repeat

component

5737 All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

IPR008160 Collagen triple helix repeat

High Scoring Alignments

gi|59861793|gb|AAH90251.1|
Unknown (protein for IMAGE:4057139) [Xenopus laevis]

view alignment view info

GO/EC Classification

Score

Evalue

% id

% target

% model

2316

0.0

82%

100%

gi|68386929|ref|XP_697388.1|
PREDICTED: similar to elastin microfibril interfacer 1 [Danio rerio]

view alignment view info

GO/EC Classification

Score

Evalue

% id

% target

% model

1234

0.0

41%

45%

100%

gi|55251218|emb|CAH69034.1|
novel protein similar to vertebrate elastin microfibril interfacer 1 (EMILIN1) [Danio rerio] >gi|71834554|ref|NP_001025378.1| hypothetical protein LOC566473 [Danio rerio]

view alignment view info

GO/EC Classification

Score

Evalue

% id

% target

% model

1147

0.0

38%

50%

100%

gi|37537835|sp|Q99K41|EMIL1_MOUSE
EMILIN-1 precursor (Elastin microfibril interface-located protein 1) (Elastin microfibril interfacer 1) [Mus musculus]

view alignment view info

GO/EC Classification

Score

Evalue

% id

% target

% model

1109

0.0

50%

43%

86%

rno:298845
LOC298845; similar to elastin microfibril interface located protein 1 [Rattus norvegicus]

view alignment view info

GO/EC Classification

Score

Evalue

% id

% target

% model

1105

0.0

50%

43%

86%

hsa:11117
EMILIN1; elastin microfibril interfacer 1 [Homo sapiens]

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GO/EC Classification

Score

Evalue

% id

% target

% model

1096

0.0

38%

60%

100%

gi|37537873|sp|Q9Y6C2|EMIL1_HUMAN
EMILIN-1 precursor (Elastin microfibril interface-located protein 1) (Elastin microfibril interfacer 1) [Homo sapiens]

view alignment view info

GO/EC Classification

Score

Evalue

% id

% target

% model

MF	5194: OBSOLETE. Mediates the adhesion of the cell to other cells or to the extracellular matrix.
MF	5201: The action of a molecule that contributes to the structural integrity of the extracellular matrix.
MF	5515: Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
BP	7155: The attachment of a cell, either to another cell or to the extracellular matrix, via cell adhesion molecules.
CC	5578: A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. As in, but not restricted to, the multicellular animals (Metazoa, ncbi_taxonomy_id:33208).

1096

0.0

38%

60%

100%

gi|61845535|ref|XP_594120.1|
PREDICTED: similar to EMILIN 1 precursor (Elastin microfibril interface-located protein 1) (Elastin microfibril interfacer 1) [Bos taurus]

view alignment view info

GO/EC Classification

Score

Evalue

% id

% target

% model

1089

0.0

41%

42%

84%

gi|74206993|dbj|BAE33288.1|
unnamed protein product [Mus musculus]

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GO/EC Classification

Score

Evalue

% id

% target

% model

1053

0.0

37%

42%

84%

gi|13529521|gb|AAH05481.1|
Elastin microfibril interfacer 1 [Mus musculus] >gi|26325298|dbj|BAC26403.1| unnamed protein product [Mus musculus] >gi|37537835|sp|Q99K41|EMIL1_MOUSE EMILIN-1 precursor (Elastin microfibril interface-located protein 1) (Elastin microfibril interfacer 1) >gi|19527130|ref|NP_598679.1| elastin microfibril interfacer 1 [Mus musculus]

view alignment view info

GO/EC Classification

Score

Evalue

% id

% target

% model

1053

0.0

37%

42%

84%