Xenopus tropicalis v4.1

Xenopus tropicalis v4.1

TRANSCRIPT ANNOTATION

Xentr4/scaffold_1464:41726-42415 e_gw1.1464.40.1 Hide

Attribute

Value

Creator

Action

Name

Description

Model Notes

Defline

Disposition

Literature

Assessment

?

Note

Creator

Action

EST evidence

Needs GO

Evidence

Type

Creator

Action

FUNCTIONAL (PROTEIN) ANNOTATION

User-Assigned Ontology

ASPECT

DETAILS

function

process

component

enzyme

kog

Automatic Ontology and Best Protein Alignments for transcript 427111

Automatic Ontology

ASPECT

GO/EC

SUPPORT

Action

High Scoring Alignments
gi\|15236481\|ref\|NP_192578.1\| structural constituent of cell wall [Arabidopsis thaliana] >gi\|7267479\|emb\|CAB77963.1\| extensin-like protein [Arabidopsis thaliana] >gi\|5731759\|emb\|CAB52560.1\| extensin-like protein [Arabidopsis thaliana] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		503	1.32991E-8	19%	73%	97%

gi\|15222668\|ref\|NP_173949.1\| structural constituent of cell wall [Arabidopsis thaliana] >gi\|12321180\|gb\|AAG50682.1\| unknown protein [Arabidopsis thaliana] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		360	5.46818E-9	15%	84%	97%

gi\|15220851\|ref\|NP_173784.1\| structural constituent of cell wall [Arabidopsis thaliana] >gi\|4056454\|gb\|AAC98027.1\| Contains repeated region with similarity to gb\|U43627 extensin (atExt1) gene from Arabidopsis thaliana. ESTs gb\|Z34165 and gb\|Z18788 come from this gene view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		256	5.11739E-6	19%	27%	95%

gi\|89257636\|gb\|ABD65124.1\| extensin, putative [Brassica oleracea] [no tax name] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		256	1.18533E-6	14%	68%	97%

gi\|50428115\|ref\|XP_457686.1\| hypothetical protein DEHA0B17017g [Debaryomyces hansenii CBS767] >gi\|49653351\|emb\|CAG85701.1\| unnamed protein product [Debaryomyces hansenii CBS767] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		251	1.10978E-7	22%	78%	76%

gi\|330130\|gb\|AAA45797.1\| latency associated transcript (LAT) ORF-2 [Human herpesvirus 1] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		251	9.52388E-9	24%	24%	73%

gi\|15235698\|ref\|NP_193075.1\| structural constituent of cell wall [Arabidopsis thaliana] >gi\|7268042\|emb\|CAB78381.1\| extensin-like protein [Arabidopsis thaliana] >gi\|4584544\|emb\|CAB40774.1\| extensin-like protein [Arabidopsis thaliana] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		247	3.43866E-8	21%	56%	99%

gi\|15233034\|ref\|NP_189496.1\| structural constituent of cell wall [Arabidopsis thaliana] >gi\|9294269\|dbj\|BAB02171.1\| unnamed protein product [Arabidopsis thaliana] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		234	1.58511E-6	21%	16%	95%

gi\|15240117\|ref\|NP_196282.1\| structural constituent of cell wall [Arabidopsis thaliana] >gi\|10178120\|dbj\|BAB11413.1\| unnamed protein product [Arabidopsis thaliana] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		234	1.3531E-6	19%	25%	93%

gi\|30681552\|ref\|NP_196281.2\| structural constituent of cell wall [Arabidopsis thaliana] view alignment view info
GO/EC Classification		Score	Evalue	% id	% target	% model
		233	1.72604E-6	18%	44%	93%