Xenopus tropicalis v4.1
TRANSCRIPT ANNOTATION 
Xentr4/scaffold_29:1439951-1491769 estExt_fgenesh1_pg.C_290028 Hide 
AttributeValueCreatorAction
Name  
Description  
Model Notes  
Defline  
Disposition  
Literature  
Assessment
 ? 
NoteCreatorAction
EST evidence  
Needs GO  
EvidenceTypeCreatorAction
 

FUNCTIONAL (PROTEIN) ANNOTATION
User-Assigned Ontology       
ASPECT DETAILS
function
      
process
      
component
      
enzyme
      
kog
      
Automatic Ontology and Best Protein Alignments for transcript 449569
Automatic Ontology
ASPECT
GO/ECSUPPORTAction
function
16491  Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.IPR002057  Isopenicillin N synthetase 
5198  The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell.IPR003129  Thrombospondin, N-terminal 
5506  Interacting selectively with iron (Fe) ions.IPR002057  Isopenicillin N synthetase 
process
7155  The attachment of a cell, either to another cell or to the extracellular matrix, via cell adhesion molecules.IPR000421  Coagulation factor 5/8 type, C-terminal 
 IPR003129  Thrombospondin, N-terminal 
 IPR000421  Coagulation factor 5/8 type, C-terminal 
9058  The energy-requiring part of metabolism in which simpler substances are transformed into more complex ones, as in growth and other biosynthetic processes.IPR002057  Isopenicillin N synthetase 

High Scoring Alignments 

gi|73965649|ref|XP_548083.2|
PREDICTED: similar to Contactin-associated protein 1 precursor (Caspr) (Caspr1) (Neurexin 4) (Neurexin IV) (p190) [Canis familiaris]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
2826
0.0
58%
55%
94%

gi|4505463|ref|NP_003623.1|
contactin associated protein 1 [Homo sapiens] >gi|1857708|gb|AAB48481.1| contactin associated protein [Homo sapiens] >gi|17433016|sp|P78357|CNTP1_HUMAN Contactin-associated protein 1 precursor (Caspr) (Caspr1) (Neurexin 4) (Neurexin IV) (p190)

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2819
0.0
58%
58%
94%

gi|14091742|ref|NP_114450.1|
contactin associated protein 1 [Rattus norvegicus] >gi|1857710|gb|AAB48482.1| contactin associated protein [Rattus norvegicus] >gi|2228765|gb|AAC53342.1| paranodin [Rattus norvegicus] >gi|17432925|sp|P97846|CNTP1_RAT Contactin-associated protein 1 precursor (Caspr) (Caspr1) (Neurexin 4) (Neurexin IV) (p190) (Paranodin)

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2797
0.0
57%
58%
94%

gi|17432981|sp|O54991|CNTP1_MOUSE
Contactin-associated protein 1 precursor (Caspr) (Caspr1) (Neurexin 4) (Neurexin IV) (Paranodin) (NCP1) (MHDNIV) >gi|7949100|ref|NP_058062.1| contactin associated protein 1 [Mus musculus] >gi|2773268|gb|AAB96760.1| neurexin IV [Mus musculus]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2787
0.0
57%
58%
94%

gi|50760877|ref|XP_425869.1|
PREDICTED: similar to Contactin associated protein 1 precursor (Caspr) (Caspr1) (Neurexin 4) (Neurexin IV) (p190) [Gallus gallus]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2774
1.4E-45
61%
63%
81%

hsa:8506
CNTNAP1, NRXN4; contactin associated protein 1  [Homo sapiens]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
2711
0.0
58%
58%
94%

gi|17433016|sp|P78357|CNTP1_HUMAN
Contactin-associated protein 1 precursor (Caspr) (Caspr1) (Neurexin 4) (Neurexin IV) (p190)  [Homo sapiens]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
MF4872: Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
MF5070: Interacting selectively and simultaneously with one or more signal transduction molecules, usually acting as a scaffold to bring these molecules into close proximity either using their own SH2/SH3 domains (e.g.Grb2) or those of their target molecules (e.g. SAM68).
MF5194: OBSOLETE. Mediates the adhesion of the cell to other cells or to the extracellular matrix.
BP7155: The attachment of a cell, either to another cell or to the extracellular matrix, via cell adhesion molecules.
BP7165: The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
CC16021: Penetrating at least one phospholipid bilayer of a membrane. Also refers to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence spans the membrane.
CC5887: Penetrating at least one phospholipid bilayer of a plasma membrane. Also refers to the state of being buried in the bilayer with no exposure outside the bilayer.
2711
0.0
58%
58%
94%

rno:84008
Cntnap1; contactin associated protein 1  [Rattus norvegicus]

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GO/EC Classification
Score
Evalue
% id
% target
% model
 
2690
0.0
58%
58%
94%

gi|17432925|sp|P97846|CNTP1_RAT
Contactin-associated protein 1 precursor (Caspr) (Caspr1) (Neurexin 4) (Neurexin IV) (p190) (Paranodin)  [Rattus norvegicus]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
MF5194: OBSOLETE. Mediates the adhesion of the cell to other cells or to the extracellular matrix.
BP7155: The attachment of a cell, either to another cell or to the extracellular matrix, via cell adhesion molecules.
CC16021: Penetrating at least one phospholipid bilayer of a membrane. Also refers to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence spans the membrane.
2690
0.0
58%
58%
94%

gi|17432981|sp|O54991|CNTP1_MOUSE
Contactin-associated protein 1 precursor (Caspr) (Caspr1) (Neurexin 4) (Neurexin IV) (Paranodin) (NCP1) (MHDNIV)  [Mus musculus]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
MF5194: OBSOLETE. Mediates the adhesion of the cell to other cells or to the extracellular matrix.
BP7155: The attachment of a cell, either to another cell or to the extracellular matrix, via cell adhesion molecules.
CC16021: Penetrating at least one phospholipid bilayer of a membrane. Also refers to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence spans the membrane.
2680
0.0
58%
58%
94%