Xenopus tropicalis v4.1

TRANSCRIPT ANNOTATION

Xentr4/scaffold_70:25898-49202 estExt_fgenesh1_pg.C_700003 Hide

Attribute

Value

Creator

Action

Name

Description

Model Notes

Defline

Disposition

Literature

Assessment

Note

Creator

Action

EST evidence

Needs GO

Evidence

Type

Creator

Action

FUNCTIONAL (PROTEIN) ANNOTATION

User-Assigned Ontology

ASPECT

DETAILS

function

process

component

enzyme

kog

Automatic Ontology and Best Protein Alignments for transcript 451233

Automatic Ontology

ASPECT

GO/EC

SUPPORT

Action

function

3779 Interacting selectively with monomeric or multimeric forms of actin, including actin filaments.

IPR001997 Calponin

process

6939 A process leading to shortening and/or development of tension in smooth muscle tissue.

IPR001997 Calponin

High Scoring Alignments
gi\|55587556\|ref\|XP_524773.1\| PREDICTED: similar to calponin 3; calponin, acidic [Pan troglodytes] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1559	0.0	68%	73%	100%

hsa:1266 CNN3; calponin 3, acidic [Homo sapiens] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1541	0.0	88%	100%	100%

gi\|6225157\|sp\|Q15417\|CNN3_HUMAN Calponin-3 (Calponin, acidic isoform) [Homo sapiens] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1541	0.0	88%	100%	100%

rno:54321 Cnn3; calponin 3, acidic [Rattus norvegicus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1524	0.0	87%	100%	100%

gi\|584956\|sp\|P37397\|CNN3_RAT Calponin-3 (Calponin, acidic isoform) (Calponin, non-muscle isoform) [Rattus norvegicus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1524	0.0	87%	100%	100%

gi\|55583981\|sp\|Q9DAW9\|CNN3_MOUSE Calponin-3 (Calponin, acidic isoform) [Mus musculus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1523	0.0	87%	100%	100%

dre:326931 zgc:64211 [Danio rerio] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1439	0.0	83%	100%	100%

gi\|76612573\|ref\|XP_879424.1\| PREDICTED: similar to calponin 3 isoform 3 [Bos taurus] [no tax name] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1390	0.0	79%	100%	100%

gi\|68355612\|ref\|XP_709736.1\| PREDICTED: similar to Calponin 3, acidic isoform 3 [Danio rerio] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1282	0.0	74%	98%	98%

gi\|47216407\|emb\|CAG01958.1\| unnamed protein product [Tetraodon nigroviridis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	1052	0.0	66%	89%	82%