Xenopus tropicalis v4.1
TRANSCRIPT ANNOTATION 
Xentr4/scaffold_661:268403-278176 estExt_fgenesh1_pg.C_6610024 Hide 
AttributeValueCreatorAction
Name  
Description  
Model Notes  
Defline  
Disposition  
Literature  
Assessment
 ? 
NoteCreatorAction
EST evidence  
Needs GO  
EvidenceTypeCreatorAction
 

FUNCTIONAL (PROTEIN) ANNOTATION
User-Assigned Ontology       
ASPECT DETAILS
function
      
process
      
component
      
enzyme
      
kog
      
Automatic Ontology and Best Protein Alignments for transcript 459505
Automatic Ontology
ASPECT
GO/ECSUPPORTAction
function
3682  Interacting selectively with chromatin, the network of fibers of DNA and protein that make up the chromosomes of the eukaryotic nucleus during interphase.IPR000953  Chromo 
8270  Interacting selectively with zinc (Zn) ions.IPR000315  Zn-finger, B-box 
process
6333  The formation or destruction of chromatin structures.IPR000953  Chromo 
component
5622  The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.IPR003649  B-box, C-terminal 
 IPR000315  Zn-finger, B-box 
5634  A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.IPR000953  Chromo 
785  The ordered and organized complex of DNA and protein that forms the chromosome.IPR000953  Chromo 

High Scoring Alignments 

gi|52783145|sp|Q92021|NF7B_XENLA
Nuclear factor 7, brain (xNF7) (xNF7-B)  [Xenopus laevis]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
3018
0.0
93%
100%
94%

gi|52783144|sp|Q91431|NF7O_XENLA
Nuclear factor 7, ovary (xNF7-O)  [Xenopus laevis]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2984
0.0
92%
100%
94%

gi|238611|gb|AAB20269.1|
zinc finger nuclear phosphoprotein [Xenopus laevis] >gi|52783145|sp|Q92021|NF7B_XENLA Nuclear factor 7, brain (xNF7) (xNF7-B) >gi|214915|gb|AAA49995.1| xnf7

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2768
0.0
81%
97%
91%

gi|1311667|gb|AAB35876.1|
nuclear factor 7 [Xenopus laevis] >gi|52783144|sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary (xNF7-O)

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2764
0.0
80%
97%
91%

gi|28839627|gb|AAH47956.1|
MGC52568 protein [Xenopus laevis]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2176
0.0
85%
100%
70%

gi|83405227|gb|AAI10974.1|
Unknown (protein for IMAGE:4202738) [Xenopus laevis]  [no tax name]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
2160
0.0
56%
95%
91%

gi|584704|sp|Q02084|A33_PLEWA
Zinc-binding protein A33  [Pleurodeles waltl]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
1887
0.0
62%
90%
88%

gi|584704|sp|Q02084|A33_PLEWA
Zinc-binding protein A33 >gi|213868|gb|AAA49614.1| Zn-binding protein  [Pleurodeles waltl]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
1878
0.0
54%
90%
88%

gi|50416449|gb|AAH78005.1|
Rnf36 protein [Xenopus laevis]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
1876
0.0
54%
99%
82%

gi|89272509|emb|CAJ82588.1|
novel protein similar to zinc finger nuclear phosphoprotein (xnf7) [Xenopus tropicalis]  [no tax name]

view alignment    view info
GO/EC Classification
Score
Evalue
% id
% target
% model
 
1635
0.0
45%
94%
91%