Xenopus tropicalis v4.1

TRANSCRIPT ANNOTATION

Xentr4/scaffold_295:540419-559370 fgenesh1_Sanger_cdna.C_scaffold_295000004 Hide

Attribute

Value

Creator

Action

Name

Description

Model Notes

Defline

Disposition

Literature

Assessment

Note

Creator

Action

EST evidence

Needs GO

Evidence

Type

Creator

Action

FUNCTIONAL (PROTEIN) ANNOTATION

User-Assigned Ontology

ASPECT

DETAILS

function

process

component

enzyme

kog

Automatic Ontology and Best Protein Alignments for transcript 477286

Automatic Ontology

ASPECT

GO/EC

SUPPORT

Action

process

7242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.

IPR001683 Phox-like

High Scoring Alignments
gi\|62858537\|ref\|NP_001016368.1\| hypothetical protein LOC549122 [Xenopus tropicalis] >gi\|89267001\|emb\|CAJ81278.1\| Novel protein containing SH3 domain, orthologous to hypothetical protein MGC32065 [Homo sapiens] [Xenopus tropicalis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2734	0.0	95%	100%	100%

gi\|47125194\|gb\|AAH70737.1\| MGC83728 protein [Xenopus laevis] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2586	0.0	89%	100%	100%

rno:315696 LOC315696; similar to hypothetical protein MGC32065 [Rattus norvegicus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2159	0.0	72%	100%	100%

gi\|57108687\|ref\|XP_544782.1\| PREDICTED: similar to SH3 and PX domain containing 3 [Canis familiaris] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2097	0.0	62%	100%	100%

gi\|76662194\|ref\|XP_588916.2\| PREDICTED: similar to SH3 and PX domain containing 3 [Bos taurus] [no tax name] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2094	0.0	63%	100%	100%

gi\|55728962\|emb\|CAH91219.1\| hypothetical protein [Pongo pygmaeus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2089	0.0	62%	100%	100%

gi\|23397574\|ref\|NP_695003.1\| SH3 and PX domain containing 3 [Homo sapiens] >gi\|17511850\|gb\|AAH18775.1\| Hypothetical protein LOC257364 [Homo sapiens] >gi\|52545784\|emb\|CAH56299.1\| hypothetical protein [Homo sapiens] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2085	0.0	62%	100%	100%

gi\|66396505\|gb\|AAH96472.1\| SH3 and PX domain containing 3 [Mus musculus] >gi\|66793416\|ref\|NP_780692.2\| SH3 and PX domain containing 3 [Mus musculus] >gi\|74209280\|dbj\|BAE25004.1\| unnamed protein product [Mus musculus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2075	0.0	61%	100%	100%

gi\|26339410\|dbj\|BAC33376.1\| unnamed protein product [Mus musculus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2071	0.0	61%	100%	100%

gi\|34864643\|ref\|XP_236271.2\| PREDICTED: similar to RIKEN cDNA E130307J07 gene [Rattus norvegicus] view alignment view info
GO/EC Classification	Score	Evalue	% id	% target	% model
	2056	0.0	61%	100%	100%