Ciona intestinalis v1.0

Download Data

Unless otherwise noted, all files are in FASTA format and compressed with gzip.

NOTE: Masked regions are represented with lowercase characters; gaps in the assembly are represented with Ns.

Assembly v2.0 (March 2005)

C. intestinalis release 2.0 assembled scaffolds (unmasked): ciona050324.unmasked.fasta.gz

Assembly v1.95 (October 2002)

C. intestinalis release 1.95 assembled scaffolds (unmasked): ciona.021113.fasta.gz

Assembly v1.0 (April 2002)

C. intestinalis release 1.0 assembled scaffolds (unmasked): ciona.fasta.gz (35038 Kb)

C. intestinalis release 1.0 assembled scaffolds (masked): ciona.rm.fasta.gz (36719 Kb)

additional fragments (phrap assembly of unplaced reads): ciona.phrp.fasta.gz (5078 Kb)

repeat sequences withheld from assembly: ciona.rpts.fasta.gz (24 Kb)

Annotation (v1.0)

C. intestinalis release 1.0 predicted transcripts: ciona.mrna.fasta.gz (6347 Kb)

C. intestinalis release 1.0 predicted peptides: ciona.prot.fasta.gz (3745 Kb)

C. intestinalis release 1.0 predicted UTR: ciona_utr.fasta.gz (713 Kb)

C. intestinalis release 1.0 genes: ciona_genes.gff.gz (1958 Kb)

Raw Shotgun Data

JGI BAC-ends and quality value files (~120 Kbp library insert size)

libraryJPB.fasta.gz (3 Mb)

libraryJPB.qual.gz (8 Mb)

Los Alamos National Labs BAC-ends and quality value files (~120 Kbp library insert size):

libraryOMM.fasta.gz (4 Mb)

Los Alamos National Labs cosmid-ends and quality value files (~36 Kbp library insert size):

libraryPTR.fasta.gz (20 Mb)

libraryPTR.qual.gz (38 Mb)