JGI home site
Assemblies
pM44601
Organism Assembly or GenBank Acceptance Date Accession Number Size (Mb) Contigs Status Funding Year
Acidiphilium cryptum JF-5 5/11/07

CP000697 Chrom

CP000689 Plasmid pACRY01
CP000690 Plasmid pACRY02

CP000691 Plasmid pACRY03
CP000692 Plasmid pACRY04

CP000693 Plasmid pACRY05
CP000694 Plasmid pACRY06

CP000695 Plasmid pACRY07
CP000696 Plasmid pACRY08

 4.0 9 Finished 2005
Acidobacteria bacterium Ellin345 1/9/06 CP000360 5.7 1 Finished 2005
Acidothermus cellulolyticus 11B 11/9/06 CP000481 2.4 1 Finished 2005
Acidovorax avenae subsp. citrulli AAC00-1 1/4/07 CP000512 5.4 1 Finished 2006
Acidovorax sp. JS42 1/4/07

CP000539 Chrom

CP000540 Plasmid pAOVO01
CP000541 Plasmid pAOVO02

 4.6 3 Finished 2006
Actinobacillus succinogenes 130Z 7/5/07 CP000746 2.3 1 Finished 2005
Alkalilimnicola ehrlichei MLHE-1 9/12/06 CP000453 3.3 1 Finished 2005
Akkermansia muciniphila ATCC BAA-835 5/5/08 CP001071 2.7 1 Finished 2006
Alkaliphilus metalliredigens QYMF 6/28/07 CP000724 4.9 1 Finished 2004
Alkaliphilus oremlandii OhILAs 10/11/07 CP000853 3.1 1 Finished 2005
Anabaena variabilis ATCC 29413 1/19/05 CP000117 Chrom
CP000118 Incision Element
CP000119 Plasmid A
CP000120 Plasmid B
CP000121 Plasmid C
 7.1 5 Finished 2003
Anaeromyxobacter dehalogenans 2CP-1 7/20/07 ABKC00000000 5.0 75 Draft 2004
Anaeromyxobacter dehalogenans 2CP-C 1/27/06 CP000251 5.0 1 Finished 2004
Anaeromyxobacter sp. Fw109-5 2CP-C 7/17/07 CP000769 5.3 1 Finished 2006
Anaeromyxobacter sp. K 6/6/07 ABHX00000000 5.0 135 Draft 2006
Arthrobacter chlorophenolicus A6 7/6/07 ABKU00000000 4.7 276 Draft 2007
Arthrobacter sp. FB24 10/24/06

CP000454 Chrom

CP000455 Plasmid 1
CP000456 Plasmid 2
CP000457 Plasmid 3

5.1 4 Finished 2004
Azotobacter vinelandii AvOP 2/28/03 AAAU00000000 5.3 34 Draft 2002
Bacillus anthracis Sterne 6/24/04 AE017225 5.2 1 Finished 2001
Bacillus cereus E33L 8/23/05 CP000001 5.3 1 Finished 2001
Bacillus cereus subsp. cytotoxis NVH 391-98 7/17/07

CP000764 Chrom

CP000765 Plasmid pBC9801

 4.1 2 Finished 2005
Bacillus coagulans 36D1 7/5/06 AAWV00000000 2.9 226 Draft 2006
Bacillus selenitireducens MLS10 6/26/07 ABHZ00000000 3.6 28 Draft 2005
Bacillus thuringiensis Al Hakam 11/27/06

CP000485 Chrom

CP000485 Plasmid pALH1

5.3 2 Finished 2002
Bacillus thuringiensis serovar konkukian 97-27 8/12/04 AE017355 Chrom
CP000047 Plasmid 		5.3 2 Finished 2001
Bacillus weihenstephanensis KBAB4 12/21/07

CP000903 Chrom

CP000904 Plasmid pBWB401

CP000905 Plasmid pBWB402

CP000906 Plasmid pBWB403

CP000907 Plasmid pBWB404

 5.9 5 Finished 2005
bacterium Ellin514 9/22/07 ABOX00000000 7.5 24 Draft 2006
Beijerinckia indica subsp. indica ATCC 9039 4/11/08

CP001016 Chrom

CP001017 Plasmid pBIND01

CP001018 Plasmid pBIND02

 4.4 3 Finished 2007
Bifidobacterium longum DJO10A 8/8/02(Jazz) AABM00000000 2.4 49 Draft 2002
Bradyrhizobium sp. BTAi1 5/11/07

CP000494 Chrom

CP000495 Plasmid pBBta01

8.5 2 Finished 2005
Brevibacterium linens BL2 9/9/02(Jazz) AAGP00000000 4.5 25 Draft 2002
Brucella canis ATCC 23365 10/16/07 CP000872 Chrom 1
CP000873 Chrom 2
 3.3 2 Finished 2005
Brucella suis ATCC 23365 12/6/07 CP000911 Chrom 1
CP000912 Chrom 2
 3.3 2 Finished 2005
Burkholderia ambifaria IOP40-10 8/31/07 ABLC00000000 7.7 629 Permanent Draft 2007
Burkholderia ambifaria MC40-6 4/3/08

CP001025 Chrom 1

CP001026 Chrom 2
CP001027 Chrom 3
CP001028 Plasmid pBMC401

 7.6 4 Finished 2006
Burkholderia ambifaria MEX-5 8/31/07 ABLK00000000 7.9 706 Draft 2007
Burkholderia cepacia AMMD 9/21/06

CP000440 Chrom 1

CP000441 Chrom 2

CP000442 Chrom 3

CP000443 Plasmid

7.5 4 Finished 2005
Burkholderia cenocepacia AU 1054 2/2/06

CP000378 Chrom 1

CP000379 Chrom 2
CP000380 Chrom 3

7.3 3 Finished 2004
Burkholderia cenocepacia HI2424 10/25/06

CP000458 Chrom 1

CP000459 Chrom 2
CP000460 Chrom 3

CP000461 Plasmid

7.7 4 Finished 2004
Burkholderia cenocepacia MC0-3 3/13/08

CP000958 Chrom 1
CP000959 Chrom 2
CP000960 Chrom 3

 8.0 3 Finished 2006
Burkholderia graminis C4D1M 8/20/07 ABLD00000000 7.5 70 Draft 2007
Burkholderia multivorans ATCC 17616 11/15/07

CP000868 Chrom 1

CP000869 Chrom 2

CP000870 Chrom 3

CP000871 Plasmid pBMUL01

7.0 4 Finished 2006
Burkholderia phymatum STM815 4/22/08

CP001043 Chrom 1

CP001044 Chrom 2
CP001045 Plasmid pBPHY01

CP001046 Plasmid pBPHY02

 8.7 4 Finished 2006
Burkholderia phytofirmans PsJN 7/17/06

AAUH00000000

 8.1 91 Draft 2006
Burkholderia sp. 383 6/8/05 CP000151 Chrom 1
CP000152 Chrom 2
CP000150 Chrom 3
 8.7 3 Finished 2003
Burkholderia vietnamiensis G4 3/26/07

CP000614 Chrom 1

CP000615 Chrom 2

CP000616 Chrom 3

CP000617 Plasmid 1 pBVIE01
CP000618 Plasmid 2 pBVIE02
CP000619 Plasmid 3 pBVIE03

CP000620 Plasmid 4 pBVIE04
CP000621 Plasmid 5 pBVIE05

 8.4 8 Finished 2003
Burkholderia xenovorans LB400 11/3/05 CP000270 Chrom 1
CP000271 Chrom 2
CP000272 Chrom 3
9.7 3 Finished 2001
Caldicellulosiruptor saccharolyticus DSM 8903 4/19/07 CP000679 3.0 1 Finished 2005
Caldivirga maquilingensis IC-167 10/5/07 CP000852 2.1 1 Finished 2006
Candidatus Amoebophilus asiaticus 5a2 7/2/07 ABLI00000000 1.8 45 Draft 2007
Candidatus Desulforudis audaxviator MP104C 3/6/08 CP000860 2.3 1 Finished 2005
Candidatus Korarchaeum cryptofilum OPF8 3/18/08 CP000968 1.6 1 Finished 2006
Candidatus Methanoregula boonei 6A8 7/26/07 CP000780 2.5 1 Finished 2006
Candidatus Ruthia magnifica Cm 12/1/06 CP000488 1.2 1 Finished 2005
Caulobacter sp. K31 2/7/08 CP000927 Chrom
CP000928 Plasmid pCAUL01
CP000929 Plasmid pCAUL02		 5.9 3 Finished 2006
Chlorobium chlorochromatii CaD3 8/12/04 CP000108 2.5 1 Finished 2003
Chlorobium ferrooxidans DSM 13031 11/2/04 AASE00000000 2.5 47 Draft 2004
Chlorobium limicola DSM 245 10/4/04 AAHJ00000000 2.8 103 Draft 2004
Chlorobium luteolum DSM 273 11/23/04 CP000096 2.4 1 Finished 2004
Chlorobium phaeobacteroides BS1 11/19/04 AAIC00000000 4.4 714 Draft 2004
Chlorobium phaeobacteroides DSM 266 12/11/06 CP000492 3.1 1 Finished 2004
Chloroflexus aggregans DSM 9485 4/12/06 AAUI00000000 4.6 109 Draft 2005
Chloroflexus aurantiacus J-10-fl 12/20/07 CP000909 5.3 1 Finished 2001
Chloroflexus sp. Y-400-fl 10/29/07 5.2 21 Draft 2005
Chromohalobacter salexigens DSM 3043 11/8/05 CP000285 3.7 1 Finished 2004
Clostridium beijerincki NCIMB 8052 6/27/07 CP000721 6.0 1 Finished 2004
Clostridium cellulolyticum H10 7/19/06

AAVC00000000


 4.0 121 Draft 2006
Clostridium thermocellum ATCC 27405 2/14/07 CP000568 3.8 1 Finished 2002
Clostridium phytofermentans ISDg 11/19/07 CP000885 4.8 1 Finished 2004
Comamonas testosteroni KF-1 7/17/06 AAUJ00000000 5.9 26 Draft 2006
Crocosphaera watsonii WH 8501 1/30/04 AADV00000000 6.2 315 Draft 2003
Cupriavidus metallidurans CH34 5/1/06

CP000352 Chrom
CP000353 Megaplasmid
CP000354 Plasmid pMOL30

CP000355 Plasmid pMOL28

 6.9 4 Finished 2001
Cyanothece sp. PCC 7424 7/2/07 ABOY00000000 6.4 118 Draft 2007
Cyanothece sp. PCC 8801 8/17/07 ABLR00000000 4.6 29 Draft 2007
Cytophaga hutchinsonii ATCC 33406 2/23/04 CP000383 4.4 1 Finished 2001
Dechloromonas aromatica RCB 3/17/05 CP000089 4.5 1 Finished 2002
Dehalococcoides sp. BAV1 5/7/07 CP000688 1.3 1 Finished 2005
Dehalococcoides sp. VS 2/19/07 ABFQ00000000 2.3 227 PermanentDraft 2005
Deinococcus geothermalis DSM 11300 2/23/06 CP000359 - Chrom
CP000358 - Plasmid pDGEO01
CP000856 - Plasmid pDGEO02
 3.0 3 Finished 2004
Delftia acidovorans SPH-1 11/16/07 CP000884 6.8 1 Finished 2006
Desulfatibacillum alkenivorans AK-01 4/26/07 ABII0000000 6.5 52 Draft 2005
Desulfitobacterium halfniense DCB-2 6/19/06 AAAW00000000 5.3 7 PermanentDraft 2001
Desulfococcus oleovorans Hxd3 10/19/07 CP000859 3.9 1 Finished 2006
Desulfotomaculum reducens MI-1 3/23/07 CP000612 3.6 1 Finished 2005
Desulfovibrio desulfuricans G20 11/19/04 CP000112 3.7 1 Finished 2002
Desulfovibrio vulgaris subsp. vulgaris DP4 1/3/07

CP000527 - Chrom

CP000528 - Plasmid pDVUL01

3.7 2 Finished 2005
Desulfuromonas acetoxidans DSM 684 2/1/06 AAEW00000000 3.8 51 PermanentDraft 2002
Dinoroseobacter shibae DFL 12 10/5/07

CP000830 - Chrom

CP000831 - Plasmid pDSHI01

CP000832 - Plasmid pDSHI02

CP000833 - Plasmid pDSHI03

CP000834 - Plasmid pDSHI04

CP000835 - Plasmid pDSHI05

 4.4 6 Finished 2006
Ehrlichia canis Jake 11/8/04 CP000107 1.3 1 Finished 2002
Ehrlichia chaffeensis Sapulpa 12/17/04 AAIF00000000 1.0 124 Draft 2002
Elusimicrobium minutum Pei191 4/30/08 CP001055 1.6 1 Finished 2007
Enterobacter sp. 638 4/18/07

CP000653 - Chrom

CP000654 - Plasmid pENTE01

4.7 2 Finished 2006
Enterococcus faecium DO 4/6/04 AAAK00000000 2.8 163 Draft 2000
Escherichia coli C str. ATCC 8739 3/11/08 CP000946 4.7 1 Finished 2006
Exiguobacterium sibiricum 255-15 4/3/08 CP001022 - Chrom
CP001023 - Plasmid pEXIG01
CP001024 - Plasmid pEXIG02
 3.0 3 Finished 2002
Exiguobacterium sp. AT1b 10/31/07 2.9 73 Draft 2007
Ferroplasma acidarmanus fer1 11/9/03 AABC00000000 1.8 56 Draft 2001
Fervidobacterium nodosum Rt17-B1 7/30/07 CP000771 1.9 1 Finished 2006
Flavobacterium johnsoniae UW101 5/1/07 CP000685 6.1 1 Finished 2005
Francisella philomiragia subsp. philomiragia ATCC 25017 2/11/8 CP000937- Chrom

CP000938 - Plasmid pFPHI01

2.0 2 Finished 2003
Frankia sp. CcI3 2/2/06 CP000249 5.4 1 Finished 2004
Frankia sp. EAN1pec 10/10/07 CP000820 9.0 1 Finished 2004
Geobacillus sp. WCH70 9/20/07 ABLJ00000000 3.3 76 Draft 2007
Geobacter bemidjiensis Bem 9/26/06 AAZA00000000 4.5 94 Draft 2005
Geobacter lovleyi SZ 8/10/06 AAVG00000000 3.9 128 Draft 2006
Geobacter metallireducens GS-15 7/13/05 CP000148 - Chrom
CP000149 - Plasmid 		4.0 2 Finished 2002
Geobacter uraniireducens RF4 5/11/07 CP000698 5.1 1 Finished 2005
Geobacter sp. FRC-32 12/5/05 AASH00000000 4.0 164 Draft 2005
Geobacter sp. M21 9/10/07 4.7 38 Draft 2007
Gluconacetobacter diazotrophicus PAl 5 10/22/07 3.9 29 Draft 2007
Haemophilus somnus 129PT 11/8/04 CP000019 2.0 1 Finished 2002
Haemophilus somnus 2336 2/26/08 CP000947 2.3 1 Finished 2002
Halorhodospira halophila SL1 1/10/07 CP000544 2.7 1 Finished 2005
Halorubrum lacusprofundi ATCC 49239 12/1/06 ABEB00000000 2.8 15 Draft 2006
Halothermothrix orenii H 168 8/2/05 AAOZ00000000 2.5 72 Draft 2005
Herpetosiphon aurantiacus ATCC 23779 11/13/07

CP000875
CP000876 Plasmid pHAU01

CP000877 Plasmid pHAU02

 6.8 3 Finished 2005
Hydrogenobaculum sp. Y04AAS1 1/29/07 ABFI00000000 1.6 94 Draft 2005
Ignicoccus hospitalis KIN4/I 8/29/07 CP000816 1.3 1 Finished 2005
Jannaschia sp. CCS1 2/7/06

CP000264 Chrom

CP000265 Plasmid

4.4 2 Finished 2004
Kineococcus radiotolerans SRS30216 7/10/07

CP000750 Chrom

CP000751 Plasmid pKRAD01

CP000752 Plasmid pKRAD02

 5.0 3 Finished 2003
Lactobacillus brevis ATCC 367 10/13/06 CP000416 Chrom
CP000417 Plasmid 1
CP000418 Plasmid 2
 2.3 3 Finished 2002
Lactobacillus casei ATCC 334 10/13/06

CP000423 Chrom

CP000424 Plasmid

 2.9 2Finished 2002
Lactobacillus delbrueckii ATCC BAA-365 10/13/06 CP000412 1.9 1 Finished 2002
Lactobacillus gasseri ATCC 33323 10/13/06 CP000413 1.9 1 Finished 2002
Lactobacillus reuteri F275 6/1/07 CP000705 2.0 1 Finished 2005
Lactobacillus reuteri 100-23 9/21/05 AAPZ00000000 2.2 103 Draft 2005
Lactococcus lactis subsp. cremoris SK11 10/13/06

CP000425 Chrom

CP000426 Plasmid 1

CP000427 Plasmid 2

CP000428 Plasmid 3

CP000429 Plasmid 4

CP000430 Plasmid 5

 2.6 6 Finished 2002
Leptothrix cholodnii SP-6 3/25/08

CP001013

 4.9 1 Finished 2007
Leuconostoc mesenteroides ATCC 8293 10/13/06

CP000414 Chrom

CP000415 Plasmid

2.1 2 Finished 2002
Magnetococcus sp. MC-1 11/8/06 CP000471 4.7 1 Finished 2001
Magnetospirillum magnetotacticum MS-1 1/16/01 AAAP00000000 9.2 555 Draft 2001
Maricaulis maris MCS10 9/14/06 CP000449 3.4 1 Finished 2006
Marinobacter aquaeolei VT8 12/28/06

CP000514 Chrom

CP000515 pMAQU01

CP000516 pMAQU02

 4.8 3 Finished 2005
Marinomonas sp. MWYL1 7/5/07 CP000749 5.1 1 Finished 2006
Mesorhizobium sp. BNC1 1/20/06

CP000390 Chrom

CP000389 Plasmid 1

CP000391 Plasmid 2

CP000392 Plasmid 3

4.9 4 Finished 2002
Metallosphaera sedula DSM 5348 4/25/07 CP000682 2.2 1 Finished 2006
Methanococcoides burtonii DSM 6242 1/9/06 CP000300 2.6 1 Finished 2002
Methanococcus aeolicus Nankai-3 6/29/07 CP000743 1.6 1 Finished 2006
Methanococcus maripaludis C5 3/15/07

CP000609 Chrom

CP000610 Plasmid

1.8 2 Finished 2006
Methanococcus maripaludis C6 11/13/07

CP000867

 1.7 1 Finished 2006
Methanococcus maripaludis C7 6/29/07 CP000745 1.8 1 Finished 2006
Methanococcus vannielii SB C5 6/29/07 CP000742 1.7 1 Finished 2006
Methanococcus voltae A3 7/24/07 ABHB00000000 1.9 5 Draft 2006
Methanocorpusculum labreanum Z 2/1/07 CP000559 1.8 1 Finished 2006
Methanoculleus marisnigri JR1 2/16/07 CP000562 2.5 1 Finished 2006
Methanosaeta thermophila PT 10/25/06 CP000477 1.9 1 Finished 2005
Methanosarcina barkerii fusaro 6/23/05 CP000099 Chrom
CP000098 Plasmid		 4.9 2 Finished 2001
Methanospirillum hungatei JF-1 2/7/06 CP000254 3.5 1 Finished 2004
Methylibium petroleiphilum PM1 1/29/07

CP000555 Chrom

CP000556 RPME01

4.6 2 Finished 2003
Methylobacillus flagellatus KT 11/8/05 CP000284 3.0 1 Finished 2003
Methylobacterium chloromethanicum CM4 4/30/07 ABEX00000000 6.2 39 Draft 2006
Methylobacterium extorquens PA1 12/20/07 CP000908 5.5 1 Finished 2006
Methylobacterium nodulans ORS 2060 8/16/07 ABIP00000000 8.7 162 Draft 2006
Methylobacterium populi BJ001 4/9/08 CP001029 Chrom
CP001030 Plasmid pMPOP01
CP001031 Plasmid pMPOP02
 5.8 3 Finished 2006
Methylobacterium radiotolerans JCM 2831 3/21/08 CP001001 Chrom
CP001002 Plasmid pMRAD01
CP001003 Plasmid pMRAD02
CP001004 Plasmid pMRAD03
CP001005 Plasmid pMRAD04
CP001006 Plasmid pMRAD05
CP001007 Plasmid pMRAD06
CP001008 Plasmid pMRAD07
CP001009 Plasmid pMRAD08		 6.9 9 Finished 2006
Methylobacterium sp. 4-46 2/20/08 CP000943 Chrom
CP000944 Plasmid pM44601
CP000945 Plasmid pM44602		7.7 3 Finished 2006
Methylocella silvestris BL2 8/31/07 ABLP00000000 4.3 44 Draft 2007
Micrococcus luteus NCTC 2665 8/31/07 ABLQ00000000 2.6 68 Draft 2007
Mono Lake Deltaproteobacter MLMS-1 8/31/05 AAQF00000000 6.1 454 Draft 2005
Moorella thermoacetica ATCC 39073 12/7/05 CP000232 2.6 1 Finished 2003
Mycobacterium gilvum PYR-GCK 4/13/07

CP000656 Chrom

CP000657 Pklasmid pMFLV01

CP000658 Pklasmid pMFLV02

CP000659 Pklasmid pMFLV03

 6.0 4 Finished 2005
Mycobacterium vanbaalenii PYR-1 12/18/06 CP000511  6.5 1 Finished 2005
Mycobacterium sp. JLS 2/27/07 CP000580  6.0 1 Finished 2005
Mycobacterium sp. KMS 12/18/06

CP000518 Chrom

CP000519 pMKMS01

CP000520 pMKMS02

 6.3 3 Finished 2005
Mycobacterium sp. MCS 11/17/05

CP000384 Chrom

CP000385 Plasmid

5.9 2 Finished 2005
Natranaerobius thermophilus JW/NM-WN-LF 4/9/08 CP001034 Chrom

CP001035 pNTHE01

CP001036 pNTHE02

 3.2 3 Finished 2007
Nitrobacter hamburgensis X14 1/9/06

CP000319 Chrom

CP000320 Plasmid 1

CP000321 Plasmid 2
CP000322 Plasmid 3

5.0 4 Finished 2004
Nitrobacter winogradskyi Nb-255 5/25/05 CP000115 3.4 1 Finished 2004
Nitrosococcus oceani ATCC 19707 5/25/05 CP000127 Chrom
CP000126 Plasmid
 3.5 2 Finished 2004
Nitrosomonas europaea ATCC 19718 11/12/02 AL954747 2.8 1 Finished 2001
Nitrosomonas eutropha C91 9/13/06

CP000450 Chrom
CP000451 Plasmid 1 CP000452 Plasmid 2

2.8 3 Finished 2004
Nitrosopumilus maritimus SCM1 11/15/07 CP000866 1.6 1 Finished 2006
Nitrosospira multiformis ATCC 25196 10/27/05 CP000103 Chrom
CP000104 Plasmid 1
CP000105 Plasmid 2
CP000106 Plasmid 3
3.2 4 Finished 2004
Nocardioides sp. JS614 12/18/06

CP000509 Chrom

CP000508 pNOCA01

5.3 2 Finished 2004
Nostoc punctiforme ATCC 29133 4/24/08

CP001037 Chrom
CP001038 Plasmid pNPUN01
CP001039 Plasmid pNPUN02

CP001040 Plasmid pNPUN03
CP001041 Plasmid pNPUN04
CP001042 Plasmid pNPUN05

 9.1 6 Finished 2001
Novosphingobium aromaticivorans DSM 12444 2/8/06 CP000248 Chrom
CP000676 Plasmid pNL1
CP000677 Plasmid pNL2
 4.2 3 Finished 2001
Ochrobactrum anthropi ATCC 49188 7/12/07 CP000758 Chrom 1
CP000759 Chrom 2
CP000760 Plasmid pOANT01
CP000761 Plasmid pOANT02
CP000762 Plasmid pOANT03
CP000763 Plasmid pOANT04
 5.2 6 Finished 2003
Oenococcus oeni PSU-1 10/13/06 CP000411 1.8 1 Finished 2002
Opitutaceae bacterium TAV2 11/30/06