JGI home site
Collaborators
Name Email Institution Organism(s)

Iain Anderson

IJAnderson@lbl.gov Joint Genome Institue, Lawrence Berkeley National Laboratory Halorubrum lacusprofundi ATCC 49239
      Methanocorpusculum labreanum Z
      Methanoculleus marisnigri JR1
      Staphylothermus marinus F1
      Thermofilum pendens Hrk 5

Daniel Arp

arpd@bcc.orst.edu Oregon State University Nitrobacter hamburgensis X14
      Nitrobacter winogradskyi Nb-255
      Nitrosococcus oceani ATCC 19707
      Nitrosomonas europaea ATCC 19718
      Nitrosomonas eutropha C91
      Nitrosospira multiformis ATCC 25196

Christopher Bagwell

christopher.bagwell@srs.gov Savannah River Technology Center Kineococcus radiotolerans SRS30216

Jill Banfield

jill@geology.wisc.edu University of Wisconsin Ferroplasma acidarmanus fer1

John Battista

jbattis@lsu.edu Louisiana State University Rubrobacter xylanophilus DSM 9941

Dennis Bazylinski

dbazylin@iastate.edu Iowa State University Magnetococcus sp. MC-1

Alex Beliaev

alex.beliaev@pnl.edu Pacific Northwest National Laboratory Anaeromyxobacter dehalogenans 2CP-1
      Anaeromyxobacter dehalogenans 2CP-C
      Anaeromyxobacter sp. K

Harry Beller

beller2@llnl.gov Lawrence Livermore National Laboratory Thiobacillus denitrificans ATCC 25259

David Benson

david.benson@uconn.edu University of Connecticut Frankia sp. CcI3

Alison Berry

amberry@ucdavis.edu University of California at Davis Acidothermus cellulolyticus 11B

Elizabeth Bertani

lebert@its.caltech.edu California Institute of Technology Magnetospirillum magnetotacticum MS-1

Robert Blankenship

Blankenship@wustl.edu Washington University Chloroflexus aurantiacus J-10-fl

Hans Blaschek

blaschek@uiuc.edu University of Illinois Clostridium beijerinckii NCIMB 8052

Paul Blum

pblum1@unlnotes.unl.edu University of Nebraska, Lincoln Metallosphaera sedula DSM 5348

Harvey Bolton

harvey.bolton@pnl.gov Pacific Northwest National Laboratory Mesorhizobium sp. BNC1

Suzanna Brauer

brauers@ebs.ogi.gov Oregon Health & Science University Candidatus Methanoregula boonei 6A8

Fred Breidt

breidt@ncsu.edu North Carolina State University Leuconostoc mesenteroides ATCC 8293

Tom Brettin

brettin@lanl.gov Los Alamos National Laboratory Bacillus anthracis Sterne
     

Bacillus cereus E33L

     

Bacillus thuringiensis serovar konkukian 97-27

     

Brucella canis ATCC 23365

     

Brucella suis ATCC 23445

Jeff Broadbent

broadbnt@cc.usu.edu Utah State University Lactobacillus casei ATCC 334
      Pediococcus pentosaceus ATCC 25745

Andreas Brune

brune@mpi-marburg.mpg.de Max Planck Institute for Terrestrial Microbiology, Marburg, Germany Elusimicrobium minutum Pei191

Don Bryant

dab14@psu.edu

Penn State University

Chlorobium chlorochromatii CaD3
     

Chlorobium limicola DSM 245

     

Chlorobium ferrooxidans DSM 13031

      Chlorobium phaeobacteroides BS1
      Chlorobium luteolum DSM 273
    Chlorobium phaeobacteroides DSM 266
    Chloroflexus aggregans DSM 9485
    Chloroflexus sp. Y-400-fl
      Herpetosiphon aurantiacus ATCC 23779
      Pelodictyon phaeoclathratiforme BU-1
      Prosthecochloris aestuarii DSM 271
      Prosthecochloris vibrioformis DSM 265
      Roseiflexus castenholzii HLO8
      Roseiflexus sp. RS-1

Colleen Cavanaugh

cavanaug@fas.harvard.edu

Harvard University

Candidatus Ruthia magnifica Cm

Patrick Chain

chain2@llnl.gov Lawrence Livermore National Laboratory Francisella philomiragiasubsp. philomiragia ATCC 25017
      Nostoc punctiforme ATCC 29133
      Yersinia pestis Antiqua
      Yersinia pestis Nepal516
      Yersinia pestis Pestoides F

Jianchi Chen

jianchi.chen@ARS.USDA.gov Agricultural Reesearch Service, USDA Xylella fastidiosa M12
      Xylella fastidiosa M23

Sallie Chisholm

chisholm@mit.edu Massachusetts Institute of Technology Prochlorococcus marinus MED4
      Prochlorococcus marinus str. MIT 9215
      Prochlorococcus marinus str. MIT 9312
      Prochlorococcus marinus str. MIT 9313
      Prochlorococcus marinus NATL2A

John Coates

jcoates@micro.siu.edu University of California, Berkeley Dechloromonas aromatica RCB

Lazlo Csonka

lcsonka@bilbo.bio.purdue.edu Purdue University Chromohalobacter salexigens DSM 3043

Michael Daly

mdaly@usuhs.mil Uniformed Services University of the Health Sciences Deinococcus geothermalis DSM 11300

Peter Dunfield

P.Dunfield@gns.cri.nz Institute of Geological and Nuclear Sciences, New Zealand Beijerinckia indica subsp. indica ATCC 9039
      Methylocella silvestris BL2

John Dunn

jdunn@bnl.gov Brookhaven National Laboratory Cupriavidus metallidurans CH34

Katrina Edwards

kje@usc.edu University of Southern California Marinobacter aquaeolei VT8

David Emerson

demerson@bigelow.org Bigelow Ocean Laboratory Leptothrix cholodnii SP-6
      Rhodopseudomonas palustris TIE-1

Scott Ensign

ensigns@cc.usu.edu Utah State University Xanthobacter autotrophicus Py2

Matthew Fields

matthew.fields@erc.montana.edu Montana State University Alkaliphilus metalliredigens QYMF
      Anaeromyxobacter sp. Fw109-5
      Thermoanaerobacter sp. X514
      Thermoanaerobacter pseudethanolicus 39E

Jim Fredrickson

Jim.fredrickson@pnl.gov Pacific Northwest National Laboratory Shewanella amazonensis SB2B
      Shewanella baltica OS155
      Shewanella denitrificans OS217
      Shewanella frigidimarina NCIMB 400
      Shewanella loihica PV-4
      Shewanella putrefaciens CN-32
      Shewanella putrefaciens 200
      Shewanella sp. ANA-3
      Shewanella sp. MR-4
      Shewanella sp. MR-7

Emilio Garcia

garcia12@llnl.gov Lawrence Livermore National Laboratory Ochrobactrum anthropi ATCC 49188

Susan Golden

sgolden@tamu.edu Texas A&M Synechococcus sp. PCC 7942 (elongatus)

Bernardo Gonzalez

bgonzale@genes.bio.puc.cl Universidad Católica de Chile Ralstonia eutropha JMP134

James Gossett

jmg18@cornell.edu Cornell University Nocardioides sp. JS614
      Polaromonas sp. JS666

Marcelo Gottschalk

gottschm@medvet.umontreal.ca University of Montreal Streptococcus suis 89/1591

Martin Hahn

martin.hahn@oeaw.ac.at Austrian Academy of Sciences Polynucleobacter necessarius STIR1
      Polynucleobacter sp. QLW-P1DMWA-1

Rolf Halden

rhalden@jhsph.edu John Hopkins Bloomberg School of Public Health Sphingomonas wittichii RW1

Caroline Harwood

csh5@u.washington.edu University of Washington Rhodopseudomonas palustris BisA53
      Rhodopseudomonas palustris BisB5
      Rhodopseudomonas palustris BisB18
      Rhodopseudomonas palustris CGA009
      Rhodopseudomonas palustris HaA2

Terry Hazen

tchazen@lbl.gov Lawrence Berkeley National Laboratory Candidatus Desulforudis audaxviator MP104C

Larry Hersman

hersman@lanl.gov Los Alamos National Laboratory Pseudomonas mendocina ymp

Wouter Hoff

whoff@midway.uchicago.edu University of Chicago Halorhodospira halophila SL1

Matthias Horn

horn@microbial-ecology.net University of Vienna Candidatus Amoebophilus asiaticus 5a2

Phil Hugenholtz

phugenholtz@lbl.gov Joint Genome Institute Halothermothrix orenii H 168

Robert Hutkins

rhutkins@unlnotes.unl.edu University of Nebraska Streptococcus thermophilus LMD-9

Lonnie Ingram

ingram@ufl.edu University of Florida Escherichia coli C str. ATCC 8739

Tom Inzana

tinzana@vt.edu Virginia Polytechnic Institute and State University Haemophilus somnus 129PT
      Haemophilus somnus 2336

Janet Jansson

janet.jansson@mikrob.slu.se Swedish University of Agricultural Sciences Arthrobacter chlorophenolicus A6
      Micrococcus luteus NCTC 2665

Paul Jensen

pjensen@ucsd.edu University of California at San Diego Salinispora arenicola CNS-205
      Salinispora tropica CNB-440

Andrew Johnston

a.johnston@uea.ac.uk University of East Anglia, Norwich, UK Marinomonas sp. MWYL1

Staci Kane

kane11@llnl.gov Lawrence Livermore National Laboratory Methylibium petroleiphilum PM1

Samuel Kaplan

samuel.kaplan@uth.tmc.edu University of Texas Medical School at Houston Rhodobacter sphaeroides ATCC 17025
      Rhodobacter sphaeroides ATCC 17029

Anna Karls

akarls@uga.edu University of Georgia Pseudoalteromonas atlantica T6c

Robert Kelly

rmkelly@eos.ncsu.edu North Carolina State University Caldicellulosiruptor saccharolyticus DSM 8903

Christina Kennedy

ckennedy@u.arizona.edu University of Arizona Azotobacter vinelandii AvOP

Staffan Kjelleberg

s.kjelleberg@unsw.edu.au University of New South Wales, Austrailia Comamonas testosteroni KF-1
      Delftia acidovorans SPH-1
      Parvibaculum lavamentivorans DS-1

Todd Klaenhammer

trk@unity.ncsu.edu North Carolina State University Lactobacillus gasseri ATCC 33323

Joel Kostka

jkostka@ocean.fsu.edu Florida State University Geobacter sp. FRC-32

Cheryl Kuske

kuske@lanl.gov Los Alamos National Laboratory Acidobacteria bacterium Ellin345
      Solibacter usitatus Ellin6076

Susan Leschine

suel@microbio.umass.edu University of Massachusetts Clostridium phytofermentans ISDg

Mary Lidstrom

lidstrom@u.washington.edu University of Washington Methylobacillus flagellatus KT

Steve Lindow

icelab@socrates.berkeley.edu University of California, Berkeley Pseudomonas syringae pv. syringae B728a

Frank Loeffler

frank.loeffler@ce.gatech.edu Georgia Institute of Technology Dehalococcoides sp. BAV1
      Geobacter lovleyi SZ

Derek Lovley

dlovley@bio.umass.edu University of Massachusetts Desulfuromonas acetoxidans DSM 684
      Geobacter bemidjiensis Bem
      Geobacter metallireducens GS-15
      Geobacter sp. M21
      Pelobacter carbinolicus
      Pelobacter propionicus DSM 2379
      Rhodoferax ferrireducens DSM 15236

Todd Lowe

lowe@soe.ucsc.edu University of California, Santa Cruz Caldivirga maquilingensis IC-167
      Pyrobaculum arsenaticum DSM 13514
      Pyrobaculum calidifontis JCM 11548
      Pyrobaculum islandicum DSM 4184
      Thermoproteus neutrophilus V24Sta

Eugene Madsen

elm3@cornell.edu Cornell University Polaromonas napthalenivorans CJ2

Timothy Magnuson

magntimo@isu.edu Idaho State University Acidiphilium cryptum JF-5

Terry Marsh

marsht@msu.edu Michigan State University Ralstonia pickettii 12D
      Ralstonia pickettii 12J

Christopher Marx

cmarx@oeb.harvard.edu Harvard University Methylobacterium chloromethanicum CM4
      Methylobacterium extorquens PA1
      Methylobacterium nodulans ORS 2060
      Methylobacterium populi BJ001
      Methylobacterium radiotolerans JCM 2831
      Methylobacterium sp. 4-46

Jere McBride

jemcbrid@utmb.edu University of Texas Medical Branch Ehrlichia canis Jake
      Ehrlichia chaffeensis Sapulpa

Mark McBride

mcbride@uwm.edu University of Wisconsin Milwaukee Cytophaga hutchinsonii ATCC 33406
      Flavobacterium johnsoniae UW101

James McCarthy

jmccarthy@ucsd.edu University of California, San Diego Pseudomonas putida GB-1

Mike McInerney

mcinerney@ou.edu University of Oklahoma Methanospirillum hungatei JF-1
      Syntrophobacter fumaroxidans MPOB
      Syntrophomonas wolfei subsp. wolfei Goettingen

David Mead

dmead@lucigen.com Lucigen Geobacillus sp. WCH70
      Hydrogenobaculum sp. Y04AAS1
      Sulfurihydrogenibium sp. YO3AOP1

Charles Miller

cdmiller@biology.usu.edu Utah State University Mycobacterium gilvum PYR-GCK
      Mycobacterium vanbaalenii PYR-1
      Mycobacterium sp. JLS
      Mycobacterium sp. KMS
      Mycobacterium sp. MCS

David Mills

damills@ucdavis.edu University of California, Davis Oenococcus oeni PSU-1

Mary Ann Moran

mmoran@uga.edu University of Georgia, Athens Jannaschia sp. CCS1
      Silicibacter sp. TM1040

Cindy Nakatsu

cnakatsu@purdue.edu Purdue University Arthrobacter sp. FB24

Mikeljon Nikolich

Mikeljon.Nikolich@NA.AMEDD.ARMY.MIL North Atlantic Regional Medical Command Yersinia pseudotuberculosis PB1/+
      Yersinia pseudotuberculosis YPIII

Kenneth Noll

noll@uconn.edu University of Conneticut Fervidobacterium nodosum Rt17-B1
      Petrotoga mobilis SJ95
      Thermosipho melanesiensis BI429
      Thermotoga lettingae TMO
      Thermotoga petrophila RKU-1
      Thermotoga sp. RQ2

Dan OSullivan

dosulliv@umn.edu University of Minnesota Bifidobacterium longum DJO10A

Himadri Pakrasi

pakrasi@biology2.wustl.edu Washington University Cyanothece sp. PCC 7424
      Cyanothece sp. PCC 8801

Brian Palenik

bpalenik@ucsd.edu Scripps Institution of Oceanography Synechococcus sp. WH8102
      Synechococcus sp. CC9605 (oligotrophic)
      Synechococcus sp. CC9902 (coastal)

Rebecca Parales

reparales@ucdavis.edu University of California, Davis Pseudomonas putida F1

Mircea Podar

podar@diversa.com Diversa Ignicoccus hospitalis KIN4/I

James Preston

jpreston@ufl.edu University of Florida Paenibacillus sp. JDR-2

Alexander Purcell

purcell@nature.berkeley.edu University of California, Berkeley Xylella fastidiosa Ann-1
      Xylella fastidiosa Dixon

Steven Ragsdale

sragsdale1@unl.edu University of Nebraska Moorella thermoacetica ATCC 39073

Wayne Reeve

w.reeve@murdoch.edu.au Murdoch University, Austrailia Rhizobium leguminosarum bv. trifolii WSM1325
      Rhizobium leguminosarum bv. trifolii WSM2304
      Sinorhizobium medicae WSM419

Margaret Riley

riley@bio.umass.edu University of Massachusetts Burkholderia phymatum STM815

Frank Robb

robb@umbi.umd.edu University of Maryland, Baltimore Sphingopyxis alaskensis RB2256
      Thermosinus carboxydivorans Nor1

Gary Roberts

groberts@bact.wisc.edu University of Wisconsin Rhodospirillum rubrum ATCC 11170

Margie Romine

margie.romine@pnl.gov Pacific Northwest National Laboratory Novosphingobium aromaticivorans DSM 12444

Michael Sadowsky

sadowsky@Soils.Umn.EDU University of Minnesota Bradyrhizobium sp. BTAi1

Milton Saier

msaier@ucsd.edu University of California, San Diego Lactobacillus brevis ATCC 367

Gary Sayler

saylor@utk.edu University of Tennessee, Knoxville Thauera sp. MZ1T

Tom Schmidt

tschmidt@msu.edu Michigan State University Opitutaceae bacterium TAV2

Kathleen Scott

kscott@chuma1.cas.usf.edu University of South Florida Thiomicrospira crunogena XCL-2
      Sulfurimonas denitrificans DSM 1251

K. T. Shanmugam

shan@ufl.edu University of Florida Bacillus coagulans 36D1

Evgenya Shelobolina

zhenya@geology.wisc.edu University of Wisconsin-Madison Geobacter uraniireduces RF4

Mark Silby

mark.silby@tufts.edu Tufts University Pseudomonas fluorescens PfO-1

Hauke Smidt

Hauke.Smidt@wur.nl Wageningen University Akkermansia muciniphila ATCC BAA-835
      bacterium Ellin514
      Opitutus terrae PB90-1
      Victivallis vadensis ATCC BAA-548

Kerry Smith

kssmith@clemson.edu Clemson University
Methanosaeta thermophila PT

Alexei Sorokin

alexei.sorokine@jouy.inra.fr Génétique Microbienne
Bacillus cereus subsp. cytotoxis NVH 391-98
      Bacillus weihenstephanensis KBAB4

Kevin Sowers

sowers@umbi.umd.edu University of Maryland, Biotechnology Institute Methanococcoides burtonii DSM 6242
      Methanosarcina barkeri fusaro

Stephen Spiro

s.spiro@uea.ac.uk Georgia Institute of Technology Paracoccus denitrificans PD1222

Alfred Spormann

spormann@stanford.edu Stanford University Dehalococcoides sp. VS

David Stahl

dastahl@u.washington.edu University of Washington Acidovorax avenae subsp. citrulli AAC00-1
      Acidovorax sp. JS42
      Nitrosopumilus maritimus SCM1
      Verminephrobacter eiseniae EF01-2

James Staley

jtstaley@u.washington.edu University of Washington Psychromonas ingrahamii 37

Jim Steele

jlsteele@facstaff.wisc.edu University of Wisconsin, Madison Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Craig Stephens

CStephens@scu.edu Santa Clara University Caulobacter sp. K31
      Maricaulis maris MCS10

Karl Stetter

Karl.Stetter@biologie.uni-regensburg.de University of Regensburg, Germany. Candidatus Korarchaeum cryptofilum OPF8

John Stolz

stolz@mailbox.cr.duq.edu Duquesne University Alkalilimnicola ehrlichei MLHE-1
      Alkaliphilus oremlandii OhILAs
      Bacillus selenitireducens MLS10
      Mono Lake Deltaproteobacter MLMS-1

Gerald Tannock

Gerald.Tannock@stonebow.otago.ac.nz University of Otago, Dunedin, New Zealand Lactobacillus reuteri F275
      Lactobacillus reuteri 100-23

Bradley Tebo

tebo@ebs.ogi.edu Oregon Health & Science University, Beaverton, OR Desulfotomaculum reducens MI-1

Teresa Thiel

thiel@umsl.edu University of Missouri, St. Louis Anabaeba variabilis ATCC 29413

Jim Tiedje

tiedjej@msu.edu Michigan State University Burkholderia ambifaria IOP40-10
      Burkholderia ambifaria MC40-6
      Burkholderia ambifaria MEX-5
      Burkholderia cepacia AMMD
      Burkholderia cenocepacia AU 1054
      Burkholderia cenocepacia HI2424
      Burkholderia cenocepacia MC0-3
      Burkholderia graminis C4D1M
      Burkholderia multivorans ATCC 17616
      Burkholderia phytofirmans PsJN
      Burkholderia sp. 383
    Burkholderia vietnamiensis G4
      Burkholderia xenovorans LB400
      Desulfitobacterium hafniense DCB-2
      Exiguobacterium sibiricum 255-15
      Exiguobacterium sp. AT1b
    Psychrobacter arcticus 273-4
      Psychrobacter cryohalolentis K5
      Psychrobacter sp. PRwf-1
      Shewanella baltica OS185
      Shewanella baltica OS195
      Shewanella baltica OS223
      Shewanella sp. W3-18-1

Louis Tisa

lst@hypatia.unh.edu University of New Hampshire Frankia sp. EAN1pec

Alexander Tomasz

tomasz@rockefeller.edu Rockefeller University Staphylococcus aureus subsp. aureus JH1
      Staphylococcus aureus subsp. aureus JH9

Eric Triplett

ewt@ufl.edu University of Florida Gluconacetobacter diazotrophicus PAl 5

Daniel van der Lelie

vdlelied@bnl.gov Brookhaven National Laboratory Enterobacter sp. 638
      Pseudomonas putida W619
      Serratia proteamaculans 568
      Stenotrophomonas maltophilia R551-3

Claire Vieille

vieille@msu.edu Michigan State University Actinobacillus succinogenes 130Z

Irene Wagner-Dobler

iwd@gbf.de National Biotechnology Research Institute (GBF), Germany Dinoroseobacter shibae DFL 12

Chris Walker

cbwalker@u.washington.edu University of Washington Desulfovibrio vulgaris subsp. vulgaris DP4

Judy Wall

wallj@missouri.edu University of Missouri Desulfovibrio desulfuricans G20

John Waterbury

jwaterbury@whoi.edu Woods Hole Oceanographic Institute Crocosphaera watsonii WH 8501
      Trichodesmium erythraeum IMS101

Boris Wawrik

wawrik@aesop.rutgers.edu Rutgers University Desulfococcus oleovorans Hxd3
      Desulfatibacillum alkenivorans AK-01

Bart Weimer

milkbugs@cc.usu.edu Utah State University Brevibacterium linens BL2
      Lactococcus lactis subsp. cremoris SK11

Ronald Weiner

rw19@umail.umd.edu University of Maryland Saccharophagus degradans 2-40

George Weinstock

George.Weinstock@uth.tmc.edu University of Texas, Houston Enterococcus faecium DO
      Rhodobacter sphaeroides 2.4.1

Juergen Wiegel

jwiegel@uga.edu University of Georgia at Athens Natranaerobius thermophilus JW/NM-WN-LF

Rachel Whitaker

rwhitaker@life.uiuc.edu University of Illinois at Urbana-Champaign Sulfolobus islandicus L.D.8.5
      Sulfolobus islandicus M.16.4
      Sulfolobus islandicus U.3.28
      Sulfolobus islandicus Y.G.57.14
      Sulfolobus islandicus Y.N.15.51

William Whitman

whitman@uga.edu University of Georgia Methanococcus aeolicus Nankai-3
      Methanococcus maripaludis C5
      Methanococcus maripaludis C6
      Methanococcus maripaludis C7
      Methanococcus vannielii SB
      Methanococcus voltae A3

David Wilson

dbw3@cornell.edu Cornell University Thermobifida fusca YX

David Wu

davidwu@che.rochester.edu University of Rochester

Clostridium thermocellum ATCC 27405

Jian-Shen Zhao

jian-shen.zhao@cnrc-nrc.gc.ca Biotechnology Research Institute, Montreal, Canada

Shewanella halifaxensis HAW-EB4

      Shewanella pealeana ATCC 700345
      Shewanella sediminis HAW-EB3
      Shewanella woodyi ATCC 51908

Jizhong Zhou

jzhou@rccc.ou.edu University of Oklahoma

Clostridium cellulolyticum H10