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| BAC Sequencing: Approved Gene List | ||||||||||||||||||||
| This list of genes was approved for BAC screening and sequencing by the Xenopus tropicalis Genome Project Advisory Committee on April 23, 2003. A set of overgo probes have been designed for the library screening. The JGI will begin sequencing approved BACs in June, 2003. A web interface will be available soon for viewing the sequencing progress of each clone. | ||||||||||||||||||||
| Gene | Probe 1 | Probe 2 | Probe 3 | Probe 4 |
| Noggin | gaatgacatcacagccgtatggagcctggctaataaatcc | tccaagcaaccaaccctggccatgggccaccacactactt | ||
| GDF-5 | ||||
| GDF-6 | ctgtgggaaattccttgtatccagcaggcatccatccctt | ggagtgtacacaagatgcattgacaggcacctgttcaaac | ||
| Wnt14 | ||||
| En-1 | acagttccaagggcagcgactccaacccggctctgctcct | tggtgtggcccgcctgggtctactgcactcgctactccga | ||
| Msx-1 | ctctgcttatggctacttaccagcccggggtgaaagtaga | atccattggaaaccgcttccctgtggggggcatcatgaaa | ||
| Msx-2 | ctttacccatcgcgatgtcttctcccaggaagatcaagga | acagagacccaagtgaagatctggttccagaacaggagag | ||
| Shh | aggactctcatctccagcgatttcctcctgttcatagaga | tgatggtggaaccgggcggcaccaaagcggtgagagagct | ||
| Gremlin | gtgcatgttactggcatgtagcagtgaatggccactgcag | ggatgaactgtctcgtttatgctctaggatcccttttcct | ||
| FGF8 | cgtctccctggctgtggctcggtgccctctcttccagact | aaggggatgggcggagggaactgcgggagctcccgggact | ||
| beta-Globin | cggtgcaatccaacatctggatgatgtgaagagccacctt | actgggtaaaacaaatgtctacagagaatgttgtaaacca | ||
| alpha-Globin (adult) | gggcagtataataagcccagaaaccattactatgttattt | gagcttatgtaaatacccccaaaatgactctatgtcctgt | ||
| alpha-Globin (larval) | ||||
| Sox3 | aggagaaccccaagatgcacaactcggagatcagtaagag | aatgctgctgcctctacctatagcatgtcccctgcctaca | ||
| Sox2 | gcccttcccaatactattagctctagtctcacagtgatga | tggactatttttgtacagaagaaaacaaaaatctggggag | ||
| Nrp1 | gtggaaagattgctccttctcctctcgtctctactggacc | atacccactacccctgaggtgaacggaatggacgaatgtg | aatgtgcgttggaggaacgtgaagccaagcttttctcagg | |
| Nrp2 | cagggtacccaaatgattacccacctcatcagaactgtga | ggataatcagtgctccagaacccaaccagaagattgtact | ||
| Xotx2 | tcaggcataaaggagctcgcttaggcacctcatcggttaa | atggggggcaaaacaaagtgagaccctctaagaagaagcc | tctccacatcatcctcatgcatgcagaggtcttaccccat | |
| HoxB9 | agttcttcctgctcacatttgctgctggggaacttgtctt | atgaccggccctggccaatcccaggacccagccactcata | ||
| xMeis3 | acttccagtcttgtccaggaacagctgcccttcttccaca | acccctctgaagaacagaaaaagcagctagcacaggatac | ||
| XKrox-20 | aatgagaagcgatcgctggatttctcctactcgtccaact | |||
| EphA4 | aactgacccatgatgctagcctcactcagaaagtctctcc | cccacattacaatgccatagctccagacatcactggcaga | ||
| En-2 | gaaggaataagccatcaggatgagctcttttctggcagag | tttgactgagcagaggaggcaaagtttggctcaggaactc | ||
| XNot | tgttacacagccctgtctttcctgcatttgggcaccactt | taccctactcccattgcccaaatggttccatgaaccctct | ||
| Xbra | gatgaggttcaaggagctcaccaatgagatgatcgtcacc | gaatccacatagtgagagttggaggcacccagagaatgat | ||
| Derriere | tctctgctcactgtgtctctagacccatccagctgcaaaa | gactctggtgcattctgtagaaccagaaagcacccctttg | ||
| Xnr1 (Nodals) | agctgtaccagaaccttgtcatggcaaacgatacagggct | attgtgcgtcccgataaagatgagccctctctcaatgttg | ||
| Xnr2 (Nodals) | gttaagaacctgcacgagagagtcaggccacgtgtcatta | ggaatatcccatcctgcaggaatctgatgccgttctaagc | ||
| Xnr3 (Nodals) | agagaagagaatgcccttcctgtgtccccgtgaagatgag | tcaggagtcaccaagaatctacccagagatggcctttctc | ||
| Xnr4 (Nodals) | cagctacctgaaacacatgtccagcaagcctcaggatcat | gcagagtttgctgaactactacgctaaaggaaaggccccg | ||
| Xnr5 (Nodals) | gtgccagtgaagatgagacttctgtcaatgctcatgtacg | tgcccactcttcttcacacaaaggaggccaggttcccttt | ||
| Xnr6 (Nodals) | catctatcccaagaggttcaacgcatttcgttgtgagggg | gcatatatgggagcaggcattctcagggcatgaagtatcc | ||
| Slug alpha | ||||
| Slug beta | cactgcaacagagcatttgcagacagatccaacttgcgag | aggaggaaagactccagaccaaactttgcgactcacatgc | ||
| Xtwi (Twist) | gtccgcaatcctttgaagaactgcaaagccagagggtcat | ttgattcttggttcagaaaactgtttctatacaagcggcg | ||
| Pax3 | tgatggatccggtctcctggtagcggcaaaggatcttgga | aaacactccacccagctggttcaccctgccttggcctaaa | ||
| Pax6 | gtcacagcggagtcaatcaactcgggggagtgtttgtgaa | cagacatcctcctactcatgcatgctgcccacaagtccat | ||
| Pax7 | ttaggccaaggcagggtgaaccagctgggtggagtgttta | cggacgtagagaagaagatcgaggagtacaagcgggagaa | ||
| Nkx6.1 | ctcccattgcccaaatggttccatgaaccctctttcatgg | atttatagtcactgtgttacttccacagtcctgatgcctt | ||
| Dbx1 | tctatccagactgccctgtccagccacaccagctttctca | cctccccttttaactccagcattgccagtaaaccctcaga | ||
| Dbx2 | ||||
| Xiro3 (Irx3) | gagttcgtatggtttgtcttgtgctaattaaacgtcggtc | tacgctgggcttgaaatgtcaatcacagtgtgagtgccaa | ||
| Olig2 | ttcctttaacctccaagttagtggaagcaatcggaacacc | gataaaaggggagagtgagagataattaacaaaaaacatg | ||
| Nkx2.2 | gatctgcctgataccaatgacgacgaaggatccattgcag | tgtcagtcacctgcatatagatctatacagctgtatatgt | ||
| Beta-tubulin | tcagtgtgatgccatcacccaaagtctcagacactgtggt | tgatcctacacgcagttaccatggagacagtgatttgcac | ||
| Pax8 | ggagattacaaacgccagaaccctacaatgtttgcctggg | aggctctccctattactacagctctgccacaaggactgca | ||
| XHex | acccatttcacgtggaccatatggacagcccttttatggg | acccaactcccttctacattgatgatatcctgggaaggag | ||
| Nkx2.5 | tctgaactcactgaggaacttgcccagagagactcctcta | ccattctctgtaaaggacattttgaacttggagcaacacc | ||
| MyoD | tctcttgtgggcatgcaaagcctgtaagaggaagaccaccaa | tgacttctacgacgacccctgtttcaatacctcggacatg | ||
| XMyf-5 | agcatgtaagagcacccattggtcaccaccaagcaggtaa | acttggctacattttgtatttaacgttaataaccaagcct | ||
| HoxA | gctttcacactcgacactcattcctcctccttttgagcag | gcactttcttttatttttctattgcattaatatgcgctgt | cttacaccaaggtgcagctaaaggagctggagagggaata | ccggtgatgtttctttacgacaacagcctggaggagatga |
| HoxB | tggtcgaactggagaaggagtttcacttcaaccgctacct | gaaatggccaatctgctcaacctgagcgagaggcaaatca | gagctggagaaagagttccatttcaatcggtaccttaccc | acatgacaggtccggatgggaagcggggcaggactggcta |
| HoxC | accaaccaagggatgtatatgcagactgggagcgatttca | gaaaacgctgcaggaaattggctgacagctaagagcggaa | ggcagatcaaaatttggttccagtaccgacggatgaaatg | gttcccggacaagttacattcgataccagaccctggattt |
| HoxD | cgccgacgaattgaaatagctcacactttgtgtctgtctg | atggttccagaacaggagggtcaaggacaagaagatcgtc | aagaagagggtgccctacaccaagctgcagctcaaagaac | |
| Tcf-1 | ggacacatacaatggccagcagagttcagcaccacctctt | aggactcaatcagtcccacctttcacagcacctcaac | ||
| Lef-1 | aaggggatccccaaaaggagaagatctacgctgagatcag | tagctcgcaaagaaaggcaactacacatgcagctttaccc | ||
| Tcf-3 | ctccagagcaaaaagcagaacgtgaaaaggagagacgggt | ttaaagagctggggaggatgtgtcaactgcacctcaacag | ||
| Tcf-4 | aaggcagagagagagaaggaaaggcggatggcaaacaatg | atggtgcaacttcacctgaagagcgataagccccaaacca | ||
| Tshb | acgtgaatccgctcttttcctacccagtagccattagctg | atgcaacactggctacactgactgcgtccaagataccatc | ||
| Bambi | aggcagacaccaacatgacaacacaaggaacctcatcacg | gtctgcacgatgttctgtctcatcccaggagtgatacatc | ||
| Bmpr2 | ||||
| Tsg | actgcattttaccccctttcctgccactgaggcaagctat | tctttggtggccaagtatgaagccctctctcctacccatt | ||
| Rb1 | cgacttttgagagaaatggatatcaacatggatgttctca | gtacttagagcgctgtgagcatcaaattatggagagcctg | agacattcaaacacgtactgatccgagatgggcagcatga | |
| Pitx1 | cctggcaattgtatgtatgctatgcctatagatcaatcga | tggccactagtttccatttgcagcgatcatctgaagccag | ||
| Pitx2 | tgggagcctactgtattatacccccaccatcctccatgaa | gctctgctataagtgaatgagagcagcatcccttgtgcaa | ||
| Pitx3 | gactatgccctcatcaatggtaccttcagcagtgactgga | ttaccagccagcaacttcaggagctggaggcaacttttc | ||
| Lens-1 | tggtgcagagcttactcaccattccttaggcttgaatggg | cccagatgacttttgctgtgttgggactgagagggttttg | ||
| FOXG1B/BF-1 | tcccttaacccttgctctgtcaaccttctcgctggacaaa | agatgcacagaggggacgcttgttgtgtttattttgaagg | ||
| EIF4A2(-like) | atgctctggaaggaaggctgttgggctttttcttctctcc | ccatcagccatacaacaaagggcaatcattccctgtatca | ||
| Zic1 | ggctgaggaggtgaaagtttctccccaggaagataaaccg | gccctatctgtgtaagatgtgcgacaaatcgtacacccac | ||
| Zic2 | aacagcttcgtggaacctactcacatgggcgcatttaagc | ggtccttcatctggggggaatctgaactaagttccccgca | ||
| Zic3 | ccacacagttcaggatgcatttacggccttggaaatgaca | gggaatttcattgaatctttaatgaacagatatcatgctg | cccagctgagtttctattggtgcaattcagactgcctcct | tcctgtgaaagtggctcaatagacagacttttgggctcag |
| Dlx3 | ||||
| Eya1 | atctagccagtccacatagtagacttagtggcagtggtga | atgccattttggagaatcacaagccactctgacctgatgg | ||
| Vax1 | ccgggcacaatatcttcaacatgcctgtgccatccctact | tgtaccggctggagatggagttccagaggtgccagtacgt | ||
| Vax2 | ctcatcttctccaaggttaccgaccccactttgttttccc | gctaatagtatgggcgatggagtgtccgaggagagaagcc | ||
| Gli1 | ccacagaatactgccaccaaatggccatcttggccagtca | ataggcaacatggccataggagacatgagctccatgctca | ||
| Gli2 | ||||
| Gli3 | ||||
| Xanf1 | tggtggtttcccataatagaggagttagtcggcggtactt | ttgagtctctccagcggaaccatgtctcctggtcttcaga | ||
| Six3 | ggacctctaccatatcctggagaatcacaagttcaccaag | tctgggacggagagcagaaaacgcactgcttcaaggagag | ||
| Emx1 | ||||
| Emx2 | ||||
| XBF2 | ||||
| Rx | agaggatagtgtcctgggctcatttcagactgagctcagt | tttggtagcccctatgtggactggcagcctataggagact | ||
| ET | ||||
| Lim2 | ||||
| Tailless | ||||
| Xwnt-8b | ctctcacttgggatcttttaccaggccagactcaacactt | tgccttaaaaggggtaaagctctcagcaagtgggagaaga | ||
| Pax2 | ||||
| Wnt1 | ||||
| Xiro1 | ||||
| MafB | tcagcaaagaggaggtaatacgcctgaagcagaagagacg | ttttggggttgggaggaagggagggggtgaaaccattgct | ||
| Gbx2 | ttctgcgggaagaatcccaaacacagaaggagaaagtccc | ccagagcctcagattatgttgtggttaatttattctgtgt | ||
| Pintallavis | atacctcagcagtggactccagaacatgctaaatagagtc | accacagaccatcttgtccattactctaactacagctctg | ||
| Cad1 | ||||
| Cad2 | ||||
| Cad3 | ||||
| FoxD3a & 3b | caaacgaacccctgattcctgcaggatggtctcttcctat | ccattggcccaatcttaagtgtccccacaaacctcatctc | ||
| Mitf | cacggattttgctacgacagcaactgatgcgtgagcagat | gcttggagtccagttataacgaagacattctcttgatgga | ||
| Evi-1 | ||||
| XL-maf | ||||
| XProx1 | ||||
| nephrin | ||||
| Lim1 | ||||
| FoxD5 | ||||
| Six1 | catgtctatgctgccttcctttggcttcactcaggagcaa | cagaatcagctgtcacccctagatggaggaaagtcgctaa | ||
| xWT1 | ccgtaccagtgtgatttcaaagactgcgagaggcgatttt | aacctgccaacgaaagttctccaggtccgaccacctgaag | ||
| Crygc | ||||
| FoxA1/HNF3a | cctaggaccagtaacattctcctggaaaatgtggtgggct | ttctctccctgccactcgaactactcgctggctgaatgtt | ||
| FoxA2/HNF3b | ccaggcactcagcttccagtatgctcggggctgtgaaaat | tactcgtacatctcgctcatcaccatggcgatccagcagt | ||
| Gata6 | tgagtcccgcgaattccttcttcccctgtccgatcaaaca | tgtggatggaatggaggcaattcgggcgcagagtttcatt | ||
| Sox17alpha | ctagcgacgatcagaatcagggaaagtgctcagtgccaat | caatgtgaaacggtctgattattgtgtacgtggtacactg | ||
| HNF1b | atggcacaacagccatttatggccactgtcactcagcttc | ctcctgaagtcttctgctgcttgttgctgctcacaggaat | ||
| endodermin | agatataacgtcccccaccccaaagaagatgccgctttca | acagcgaagttttgcgaaggaacgaagaagcaccagctgt | ||
| FOR1 | cgtggaaagcaagagacacaaagcttacccccttgctgta | atgagacagtgggaagacctggatcagaccatggcaaaca | ||
| Endocut | gttctgttatcccctgtgccaaaggatggggtttttcagt | gagggaatggaagaagtgggatctgatggactggagaaac | ||
| Vito | atcactgcacctgtagttacctcccctgggcatactttct | acttcgctttaataagtttgtccggctcctcggcaccata | ||
| Pdx1 | ttcttctgctctgccaacttcgccccagtccaatcccatt | ttattcatcgcatagtacagtgtgctagcatagaggcgta | ||
| FLRT3 | ccgcacttggtttgttttgcacaggaagcagggcaaatac | atgtgttccctctgctcactgatcctgcatggtactagct | ||
| Snail | acaagtacccacttcctgtgatcccccagccagagatttta | tgcgactgcgaacccaggaatcccctcatcggctgctaaa | ||
| DHCR7 | ggaagtggattacttctcattggctgccgtcctgttccta | aacgcctaccacttccactggttctccccgaccatca | ||
| Sizzled | tcgcacaactgcaaacatgactggagtcttcctgctcctc | ccgcagcatgtgtgttgctgtaagagacagttgtgcccca | ||
| WNT11 | ggatggtttagtccctgaacagtctcagctctgcaaaagg | gtcaccaggggtataaatgccagaggcagcaagaacaaag | ||
| Mix.2 | tggactcattcagccaacaactggaggacttctacccttc | gccatagacatatggcacttggactctggggtgggaatgt | ||
| c-fos | agcagcaccgaatatgatgcagcttcttcccgttgcagta | tggtttgacagcttggtgagccaggactgacggtctttct | ||
| XL045a20 | ccagaacatttcctgcaactgtccttgtggctggaactga | gctattgatgtgctggggaaggacgagctcgatcagacct | ||
| Rnd1 | gttggatttgtcccaccatactccctgcatcaccatgaag | gtatattccgagcagcgtcttccgcgtgtgtgaacaaagc | ||
| Jun-B | cacacactttgtccctggcttagggggacttgtgggtatt | acggaggagcaagaatgctttgtggatgggttcgttaagg | ||
| TA2-like | ||||
| xIRG | agctctgatattgccctcattgcccagacatgttctcagc | gtttcaccctccctcagttgtcggaaccatgggaagtgca | ||
| siamois | ggtttggttccagaacagaagagccagacacctcccaaga | cagacatgacctgtgagcctgaaatggagcagattgtctc | ||
| chordin | ttgctgccatgaagcagtgggattctagaggcagcatttg | ataatgagcgctggcatccaactgtgacaccctttggaga | ||
| XSPR-2 | tgatgaactgcagaggcaccttaggactcatactggtgag | tggtgtccctaaagtgcagtatcctggccacatgcaaact | ||
| MAP kinase phosphatase X17C | cctgttctctcctcaatgctagagaagttgagacccgctg | atagttcctgtggcagtagctctccaccggtccttggttt | ||
| frizzled-10B | gggcagctctatgttatccaggaaggcttggaaagtacag | taaggagggtgatgaaaactggtggggagaacacagacaa | ||
| Xlim-5 | ctgaataaggatgcgcgaattgccaagcttggcactcaga | ggtgccatctagtgatctgtttcaacactgcaactcttcc | ||
| FGF-3 | ccccgaatgtgagtttgtggaaagaattcacgagctcgga | gtgctagacaacaaggaccatgacgccgtgaggttatttc | ||
| eFGF | ggtatttttagagcaattgactccttaaaccacgtgtgcc | ggtaaagtgctatggctgagctgttggggaagatcaacac | ||
| Eomesodermin | ||||
| Edge-2 | gctgggacttgtctcaggggaaaggctgtgtctctcccaa | agatgtcaaaccagcgggtgtgcatcctcattgcctgcat | ||
| Mixer | tccgccaaagcaagaaatggtctcccccgtatcttcagct | ttctctccagtctcagattctgggcgtagtgatggctcta | ||
| Xopl | atcaaccccttcgcagacggcatgggagctttcaagctca | gccctatctgtgtaagatgtgcgacaaatcgtacacccac | ||
| Xag1 | tgcacattgtgctccttctgatgctggagagatgaccaca | tggtaactctgccaagtctgatccagagcccgtaccaata | ||
| Xcg | ||||
| Gob4 | ||||
| MetTK | ||||
| HNF1a/LFB1 | taacagcgttggtagcagcttgaccacactgcagtctgtt | tctccttcacacagcaccattgacagtttcatgtccaccc | ||
| Evx2 | aggggaaagaagctcagccagtatcccgaagtttccaaag | cctgctgcaaatcatcatcatctctatctacagcagcagc | ||
| Insertion mutant | ||||
| CaV2.2 | ||||
| VegT | gcctatagctacagtgctgcaatgagaaactgctgtcagg | gtctccatctggttgtacaccttcaataaatgtcctcctt | ||
| Geminin L & H | aaggctaaagttgaggtggctgttgatctagagcacagag | ggaaatgcaccacgaagccttgaagacttaaagaatctgg | ||
| XL17 | ||||
| XL18 | agggtggaagagtgttatgcaaccccaaccaatgacccaa | ccccatgctccttaattttacctgcagttacaacctgaca | ||
| Eya2 | ||||
| Eya3 | ttcagacaccatctccacctgctgtgctaacctcatcagg | ctcagccatacacagtttaccctcaggcttcgccaacgta | ||
| XCtk1 | ||||
| Xmc | ||||
| Fibromodulin | ||||
| PAPC | ||||
| Fullback | ||||
| ADMP | ||||
| Retrotransposon 1a11 | ||||
| Prickle | ||||
| MHC-Larynx | ||||
| Wnt5a | ||||
| Glypican4/6 | ||||
| Formin |
Comments/Questions
DOE Joint Genome Institute
© 2004