Status

The assembly release of whole genome shotgun reads was constructed with the JGI assembler, JAZZ.

The short summary of the 8x Trichoderma atroviride genome is as follows:

Main Genome Total Reads in the assembly: 430,655
Main Genome Total Number of Scaffolds: 50
Main Genome Total Number of Contigs: 350
Main Genome Scaffold Sequence Total: 36.1 MB
Main Genome Contig Total: 36.0 MB (->0.16% gap)
Main Genome Scaffold N/L50: 6/2.00 MB
Main Genome Contig N/L50: 46/252 KB
Main Genome Depth: 8.26 +/-0.03

The current draft release, version 1.0, includes a total of 11,100 gene models predicted and functionally annotated using the JGI annotation pipeline.

Collaborators

• US Department of Energy Joint Genome Institute (JGI)
• Scott Baker, PNNL
• Christian Kubicek, Vienna University of Technology, Austria

Links

• Trichoderma virens
• Trichoderma reesei

Funding

This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396.