Status
[August 2016] (Aug 2016) The Auriculariopsis ampla NL-1724 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Auriculariopsis ampla v1.0
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 49.87 |
Sequencing read coverage depth | 54.38x |
# of contigs | 351 |
# of scaffolds | 351 |
# of scaffolds >= 2Kbp | 343 |
Scaffold N50 | 19 |
Scaffold L50 (Mbp) | 0.54 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 4.71, 3.48, 2.25 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
EstClusters | ESTclusters | 73564 | 53270 | 72.4% |
Ests | est.fasta | 74800772 | 69462464 | 92.9% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1764 | 1500 |
transcript | 1437 | 1224 |
exon | 251 | 154 |
intron | 71 | 55 |
description: | ||
protein length (aa) | 418 | 346 |
exons per gene | 5.72 | 4 |
# of gene models | 15576 |
Collaborators
László Nagy, Hungarian Academy of Sciences
Joseph W. Spatafora, Oregon State University
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Almási É, Sahu N, Krizsán K, Bálint B, Kovács GM, Kiss B, Cseklye J, Drula E, Henrissat B, Nagy I, Chovatia M, Adam C, LaButti K, Lipzen A, Riley R, Grigoriev IV, Nagy LG
Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae.
New Phytol. 2019 Oct;224(2):902-915. doi: 10.1111/nph.16032
Almási É, Sahu N, Krizsán K, Bálint B, Kovács GM, Kiss B, Cseklye J, Drula E, Henrissat B, Nagy I, Chovatia M, Adam C, LaButti K, Lipzen A, Riley R, Grigoriev IV, Nagy LG
Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae.
New Phytol. 2019 Oct;224(2):902-915. doi: 10.1111/nph.16032
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute is supported by the Office of Science of the U.S.
Department of Energy under Contract No. DE-AC02-05CH11231.