Selaginella moellendorffii v1.0
Please note that the latest data is available at Phytozome.
To view archival data, please see Selaginella moellendorffii v1.0.

Status

v1.0 (December 20, 2007): The Selaginella moellendorffii genome sequence assembly v1.0 was built with Arachne assembler from whole genome shotgun and paired end sequencing reads. The nuclear genome sequence from this draft assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the S. moellendorffii v1.0 release:

Nuclear Genome Assembly1
v1.0
Nuclear genome size (Mbp)
 212.5
Sequencing read coverage depth
7.0x
Reported # of contigs
5,156
# of nuclear scaffolds
759
# of nuclear scaffolds >2 Kbp
726
Nuclear scaffold N/L50
38/1.7 Mbp
Three largest Scaffolds (Mbp)
7.0
6.2
4.5

 [1] While the estimated genome size is 110Mb, we sequenced two divergent haplotypes of Selaginella so this assembly represents 212 Mb of genomic sequence. The statistics above include only nuclear scaffolds1kb or longer.

Gene Models2
v1.0 all scaffolds2
v1.0 non-redundant3
length (bp) of:
average
average
gene
1711.37
1701.63
transcript
1229.57
1193.81
exon
213.66
213.44
intron
103.33
112.56
description:


protein length (aa)
392.04
381.85
exons per gene
5.75
5.59
# of gene models
34,697
22,285

[2] FilteredModels2 gene model track
[3] FilteredModels3 gene model track

ESTs
Data set
# sequences total
# mapped to genome
# not mapped to genome
% mapped to genome
EST clusters
EstClusters_556_S_moellendorffii_Jgi20060227
19,871
17,514
2,357
88%
ESTs
Ests_naEstSelaginella_moellendorffiiAll20060227
93,812
89,049
4,763
95%

Collaborators

Links

Funding

This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396.